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SCNpilot_cont_1000_p_scaffold_7_curated

Search features with annotation key words

Displaying items 1-30 of 451 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_7_curated_1
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3..881)
DNA (879bp) protein (293aa)
RHS repeat-associated core domain protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KTP5_SOLCM
RHS repeat-associated core domain-containing protein
RHS repeat-associated core domain protein {ECO:0000313|EMBL:AFD06646.1}; Flags: Precursor;; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
SCNpilot_cont_1000_p_scaffold_7_curated_2
unknown

Not on your lists

comp(941..1063)
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_7_curated_3
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1116..5348)
DNA (4233bp) protein (1411aa)
YD repeat protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PN48_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:KIC92761.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_7_curated_4
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5547..6287)
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VLU1_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EFK58203.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_7_curated_5
unknown

Not on your lists

comp(6808..6978)
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_7_curated_6
unknown

Not on your lists

comp(7722..8099)
DNA (378bp) protein (126aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_7_curated_7
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8107..10890)
DNA (2784bp) protein (928aa)
sugar-binding protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B4EF46
RHS repeat-associated core domain-containing protein
RHS repeat-associated core domain protein {ECO:0000313|EMBL:AFD06538.1}; Flags: Precursor;; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
SCNpilot_cont_1000_p_scaffold_7_curated_8
Elizabethkingia anophelis, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10832..12307)
DNA (1476bp) protein (492aa)
Uncharacterized protein n=2 Tax=Elizabethkingia anophelis RepID=L8K7M9_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:CDN74644.1}; TaxID=1117645 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia anophelis.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_7_curated_9
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12328..15705)
DNA (3378bp) protein (1126aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5IXC1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK02104.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_7_curated_10
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15822..16979)
DNA (1158bp) protein (386aa)
Anti-FecI sigma factor, FecR n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PLS4_CHIPD
anti-FecI sigma factor FecR
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:ACU60361.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_p_scaffold_7_curated_11
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17778..18470)
DNA (693bp) protein (231aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PKD5_CHIPD
winged helix family two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ACU60221.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_p_scaffold_7_curated_12
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18460..19911)
DNA (1452bp) protein (484aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Histidine kinase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PKD4_CHIPD
histidine kinase
SCNpilot_cont_1000_p_scaffold_7_curated_13
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20027..22411
DNA (2385bp) protein (795aa)
TonB-dependent receptor plug n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PKD3_CHIPD
Contig116, whole genome shotgun sequence {ECO:0000313|EMBL:KIO75071.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
TonB-dependent receptor plug
SCNpilot_cont_1000_p_scaffold_7_curated_14
unknown

Not on your lists

22380..22568
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_7_curated_15
Galbibacter marinus, Galbibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

22939..25362
DNA (2424bp) protein (808aa)
Glycoside hydrolase n=1 Tax=Galbibacter marinus RepID=K2PP93_9FLAO
Glycoside hydrolase {ECO:0000313|EMBL:EKF54305.1}; TaxID=555500 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Galbibacter.;" source="Galbibacter marinus.;"
alpha-L-fucosidase
SCNpilot_cont_1000_p_scaffold_7_curated_16
unknown

Not on your lists

25805..25963
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_7_curated_17
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26354..26956)
DNA (603bp) protein (201aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PM46_CHIPD
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACU62260.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_p_scaffold_7_curated_18
GWA2_OD1_50_22_partial, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(28565..29026)
DNA (462bp) protein (154aa)
Cell surface receptor IPT/TIG domain protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KYX7_HALH1
FG-GAP repeat protein {ECO:0000313|EMBL:KKW16960.1}; TaxID=1619043 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Magasanikbacteria) bacterium GW2011_GWA2_50_22.;"
cell surface receptor IPT/TIG domain-containing protein
SCNpilot_cont_1000_p_scaffold_7_curated_19
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29654..31138)
DNA (1485bp) protein (495aa)
RHS repeat-associated core domain-containing protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YDZ1_9SPHI
RHS repeat-associated core domain-containing protein {ECO:0000313|EMBL:EHQ24331.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
RHS repeat-associated core domain-containing protein
SCNpilot_cont_1000_p_scaffold_7_curated_20
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31713..33488)
DNA (1776bp) protein (592aa)
carbohydrate-binding protein SusD n=1 Tax=Cytophagales str. B6 RepID=UPI0003B67E55
Uncharacterized protein {ECO:0000313|EMBL:ETZ20597.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
RagB/SusD domain-containing protein
SCNpilot_cont_1000_p_scaffold_7_curated_21
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(33505..37038)
DNA (3534bp) protein (1178aa)
TonB-denpendent receptor n=1 Tax=Cytophagales str. B6 RepID=UPI0003B4314F
Contig62, whole genome shotgun sequence {ECO:0000313|EMBL:KIO76454.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
TonB-dependent receptor plug
SCNpilot_cont_1000_p_scaffold_7_curated_22
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(37157..38209)
DNA (1053bp) protein (351aa)
hypothetical protein, partial n=1 Tax=Cytophagales str. B6 RepID=UPI0003B71B14
Uncharacterized protein {ECO:0000313|EMBL:AHF17692.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
anti-sigma factor
SCNpilot_cont_1000_p_scaffold_7_curated_23
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

38345..38941
DNA (597bp) protein (199aa)
RNA polymerase subunit sigma-24 n=1 Tax=Cytophagales str. B6 RepID=UPI0003B440EB
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:AHF15736.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
ECF subfamily RNA polymerase sigma-24 subunit
SCNpilot_cont_1000_p_scaffold_7_curated_24
Epilithonimonas lactis, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(39232..40125)
DNA (894bp) protein (298aa)
Transcriptional regulator n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0P522_9SPHI
Transcriptional regulator {ECO:0000313|EMBL:KFC18226.1}; TaxID=421072 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas lactis.;"
AraC family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_7_curated_25
Epilithonimonas lactis, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

40630..41613
DNA (984bp) protein (328aa)
aldehyde oxidase n=1 Tax=Spirosoma luteum RepID=UPI0003707948
Aldehyde oxidase {ECO:0000313|EMBL:KFC18223.1}; TaxID=421072 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas lactis.;"
aldo/keto reductase
SCNpilot_cont_1000_p_scaffold_7_curated_26
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

41615..42067
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI000382A617
Uncharacterized protein {ECO:0000313|EMBL:KGO86524.1}; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_7_curated_27
Pantoea sp. At-9b, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42115..42942
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Escherichia coli UMEA 3703-1 RepID=T9QXT1_ECOLX
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADU71304.1}; TaxID=592316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. (strain At-9b).;"
SCNpilot_cont_1000_p_scaffold_7_curated_28
BJP_IG2103_Bacteroidetes_37_22, Bacteroidetes, Bacteria

Not on your lists

42971..43798
DNA (828bp) protein (276aa)
short-chain dehydrogenase n=1 Tax=Segetibacter koreensis RepID=UPI00037D24B7
short chain dehydrogenase
Tax=BJP_IG2103_Bacteroidetes_37_22
SCNpilot_cont_1000_p_scaffold_7_curated_29
Flavobacterium saliperosum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(43935..45197)
DNA (1263bp) protein (421aa)
phrB3; deoxyribodipyrimidine photolyase PhrB3 (EC:4.1.99.3); K01669 deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
Cryptochrome DASH, partial n=1 Tax=Cytophagales str. B6 RepID=UPI0003B36A1E
PhrB3 protein {ECO:0000313|EMBL:ESU27676.1}; TaxID=1341155 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium saliperosum S13.;"
SCNpilot_cont_1000_p_scaffold_7_curated_30
Flavobacteria bacterium MS024-2A, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(45207..45482)
DNA (276bp) protein (92aa)
RNA methyltransferase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B47B04
Uncharacterized protein {ECO:0000313|EMBL:EEG42325.1}; TaxID=487796 species="Bacteria; Bacteroidetes; Flavobacteriia.;" source="Flavobacteria bacterium (strain MS024-2A).;"
hypothetical protein
Displaying items 1-30 of 451 in total

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