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SCNpilot_cont_1000_p_scaffold_266_curated_8

Organism: scnpilot_dereplicated_Mucilaginibacter_1

near complete RP 52 / 55 MC: 3 BSCG 50 / 51 ASCG 15 / 38
Location: 10614..11474

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C437_SPHS2 similarity UNIREF
DB: UNIREF100
  • Identity: 70.6
  • Coverage: 286.0
  • Bit_score: 396
  • Evalue 1.70e-107
sigma-70 family RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 70.6
  • Coverage: 286.0
  • Bit_score: 396
  • Evalue 5.50e-108
RNA polymerase sigma factor rpoD {ECO:0000313|EMBL:ETZ23549.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 70.6
  • Coverage: 286.0
  • Bit_score: 396
  • Evalue 2.40e-107

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Taxonomy

Pedobacter sp. V48 → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 861
ATGAGGCAACTTAAAATTAGTGAGTCTATCACCAATCGTGAGACGGCGTCGTTGAATCAATATTTGTCAGACATTGCCAAGATTCCGATGGTTACCGCACAGGAAGAGGTGATCTTAACTCAAAAAATAAGAGAGGGCGACCAGGCTGCGCTGGAGCGTTTAACTACCGCCAACCTGCGCTTTGTGGTTTCTGTAGCCAAACAATATCAAAGCTCTGGCCTTACCCTTGGCGACCTGATCAATGAAGGCAACGTGGGCCTGGTTAAGGCAGCTAAACGTTTTGATGAAACCAAAGGCTTTAAGTTTATATCATATGCCGTATGGTGGATACGCCAGTCTATATTGGCAGCTATTGCCGAACAATCGCGCATGGTGCGTTTACCAGCCAACCAGGTGGGCGACCTGTCGAAAATAGCAAAAGCGGCATCTAAATTAGAGCAGGTATATGAAAGGCAGCCAACTCCGGAAGAATTGGCAGACGACCTTGAACTTACCGTTGAAAAAATAACCGGCTCATTGGCCAATTCGGGCAGGCACTTGTCTTATGACACGCCTTTCTCGGCTGATGAGGATAATACCCTGCTTGATGTTTTAAAGAGCGCTGATCCGGATACAGACAAAGATATGATGAATGAATCATTAAGTATTGATGTAAACGAAAGTATGCGCATACTTGGCGATAAGGAAAGAGAAATATTGGAACTTTTCTTCGGCCTTAAACATCAGCACGCGCACAGCCTGGAAGAAATTGGCAATATGTTTAACCTTACCCGTGAGCGGGTAAGGCAAATTAAAGATAAAGCCCTTGCAAGGCTTCGTGGCAGCAGGCAGGCGGTATCGTTAAAAACCTATCTGAATTAA
PROTEIN sequence
Length: 287
MRQLKISESITNRETASLNQYLSDIAKIPMVTAQEEVILTQKIREGDQAALERLTTANLRFVVSVAKQYQSSGLTLGDLINEGNVGLVKAAKRFDETKGFKFISYAVWWIRQSILAAIAEQSRMVRLPANQVGDLSKIAKAASKLEQVYERQPTPEELADDLELTVEKITGSLANSGRHLSYDTPFSADEDNTLLDVLKSADPDTDKDMMNESLSIDVNESMRILGDKEREILELFFGLKHQHAHSLEEIGNMFNLTRERVRQIKDKALARLRGSRQAVSLKTYLN*