ggKbase home page

SCNpilot_cont_300_bf_scaffold_666_curated

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_666_curated_1
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1153)
DNA (1152bp) protein (384aa)
peptidase M41, FtsH (EC:3.6.4.6); K03798 cell division protease FtsH [EC:3.4.24.-]
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; Flags: Precursor;; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SP28_NITWN
SCNpilot_cont_300_bf_scaffold_666_curated_2
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1542..2576)
DNA (1035bp) protein (345aa)
tRNA(Ile)-lysidine synthetase-like protein; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
tRNA(Ile)-lysidine synthase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHR1_NITHX
SCNpilot_cont_300_bf_scaffold_666_curated_3
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2726..3682)
DNA (957bp) protein (319aa)
TPR repeat protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHR0_NITHX
TPR repeat-containing protein
TPR repeat protein {ECO:0000313|EMBL:ABE64237.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_666_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4296..4997
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P911_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37269.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
high-affinity nickel-transporter
SCNpilot_cont_300_bf_scaffold_666_curated_5
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5019..6713)
DNA (1695bp) protein (565aa)
membrane protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003707913
hypothetical protein
Membrane protein {ECO:0000313|EMBL:KJC48274.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
SCNpilot_cont_300_bf_scaffold_666_curated_6
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7509..7994
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000360B390
Uncharacterized protein {ECO:0000313|EMBL:EIG61863.1}; Flags: Precursor;; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_666_curated_7
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8040..8597
DNA (558bp) protein (186aa)
Putative membrane protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YV45_9RHIZ
Putative membrane protein {ECO:0000313|EMBL:EIM27837.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_666_curated_8
unknown

Not on your lists

comp(8786..8896)
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_666_curated_9
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8896..9528)
DNA (633bp) protein (211aa)
Urease accessory protein UreG n=1 Tax=Afipia felis ATCC 53690 RepID=K8NYN4_AFIFE
Urease accessory protein UreG {ECO:0000256|HAMAP-Rule:MF_01389}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
urease accessory protein UreG; K03189 urease accessory protein
SCNpilot_cont_300_bf_scaffold_666_curated_10
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9563..10114)
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037F2ED6
Urease accessory protein UreE {ECO:0000256|HAMAP-Rule:MF_00822, ECO:0000256|SAAS:SAAS00072411}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
urease accessory protein UreE
SCNpilot_cont_300_bf_scaffold_666_curated_11
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10588..11349
DNA (762bp) protein (254aa)
Urease accessory protein UreD n=1 Tax=Afipia felis ATCC 53690 RepID=K8NV32_AFIFE
Urease accessory protein UreD {ECO:0000256|HAMAP-Rule:MF_01384}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
urease accessory protein UreD; K03190 urease accessory protein
SCNpilot_cont_300_bf_scaffold_666_curated_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11377..11679
DNA (303bp) protein (101aa)
Urease subunit gamma {ECO:0000256|HAMAP-Rule:MF_00739, ECO:0000256|RuleBase:RU003850}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_00739, ECO:0000256|RuleBase:RU003850};; Urea amidohydrolase subunit gamma {ECO:0000256|HAMAP-Rule:MF_00739}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
urease subunit gamma; K01430 urease subunit gamma [EC:3.5.1.5]
Urease subunit gamma n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQ91_AFIFE
SCNpilot_cont_300_bf_scaffold_666_curated_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11690..11995
DNA (306bp) protein (102aa)
Urease subunit beta {ECO:0000256|HAMAP-Rule:MF_01954}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_01954};; Urea amidohydrolase subunit beta {ECO:0000256|HAMAP-Rule:MF_01954}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
urease subunit beta; K01429 urease subunit beta [EC:3.5.1.5]
Urease subunit beta n=1 Tax=Afipia felis ATCC 53690 RepID=K8NLU3_AFIFE
SCNpilot_cont_300_bf_scaffold_666_curated_14
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12005..13708
DNA (1704bp) protein (568aa)
Urease subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_01953, ECO:0000256|SAAS:SAAS00033844};; Urea amidohydrolase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
ureC; urease subunit alpha; K01428 urease subunit alpha [EC:3.5.1.5]
Urease subunit alpha n=1 Tax=Afipia felis ATCC 53690 RepID=K8NYN6_AFIFE
SCNpilot_cont_300_bf_scaffold_666_curated_15
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13765..14808
DNA (1044bp) protein (348aa)
Urea transporter n=1 Tax=Afipia felis ATCC 53690 RepID=K8NS68_AFIFE
Urea transporter {ECO:0000313|EMBL:EKS31284.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
Urea transporter; K08717 urea transporter
SCNpilot_cont_300_bf_scaffold_666_curated_16
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14815..15498)
DNA (684bp) protein (228aa)
Urease accessory protein UreF n=1 Tax=Afipia felis ATCC 53690 RepID=K8NV35_AFIFE
Urease accessory protein UreF {ECO:0000256|HAMAP-Rule:MF_01385}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
urease accessory protein UreF; K03188 urease accessory protein
SCNpilot_cont_300_bf_scaffold_666_curated_17
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15825..17264)
DNA (1440bp) protein (480aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQ96_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS31286.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
citrate transporter
SCNpilot_cont_300_bf_scaffold_666_curated_18
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18192..20201
DNA (2010bp) protein (670aa)
Nickel/cobalt-specific TonB-dependent outer membrane receptor n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QGE4_9BRAD
Nickel/cobalt-specific TonB-dependent outer membrane receptor {ECO:0000313|EMBL:EGP09808.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_666_curated_19
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20496..23561)
DNA (3066bp) protein (1022aa)
RND efflux transporter, translocase subunit n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JI82_HYPSM
RND efflux transporter, translocase subunit
RND efflux transporter, translocase subunit {ECO:0000313|EMBL:CCB64497.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_cont_300_bf_scaffold_666_curated_20
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23558..24673)
DNA (1116bp) protein (372aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ELM3_METSB
RND family efflux transporter MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ACK50017.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_300_bf_scaffold_666_curated_21
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24937..25464)
DNA (528bp) protein (176aa)
Putative cation-transporting P-type ATPase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X1W5_9BRAD
Putative cation-transporting P-type ATPase {ECO:0000313|EMBL:EAQ33777.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
ATPase P
SCNpilot_cont_300_bf_scaffold_666_curated_22
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25467..27665)
DNA (2199bp) protein (733aa)
ATPase, P-type (Transporting), HAD superfamily, subfamily IC n=1 Tax=Burkholderia sp. H160 RepID=B5WEQ3_9BURK
ATPase, P-type (Transporting), HAD superfamily, subfamily IC {ECO:0000313|EMBL:EEA03183.1}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. H160.;"
ATPase P
SCNpilot_cont_300_bf_scaffold_666_curated_23
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27707..29359)
DNA (1653bp) protein (551aa)
Na+/Picotransporter n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A9E9_STAND
Uncharacterized protein {ECO:0000313|EMBL:CDM61342.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
Na+/Picotransporter; K03324 phosphate:Na+ symporter
SCNpilot_cont_300_bf_scaffold_666_curated_24
Burkholderia sp. CCGE1002, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29374..30291)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. (strain CCGE1002) RepID=D5WGS6_BURSC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG17671.1}; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1002).;"
SCNpilot_cont_300_bf_scaffold_666_curated_25
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31513..31983
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NK05_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28749.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_666_curated_26
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32188..33261)
DNA (1074bp) protein (358aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YKZ5_9BRAD
Putative uncharacterized protein {ECO:0000313|EMBL:EHR01865.1}; Flags: Precursor;; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_666_curated_27
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33812..34522
DNA (711bp) protein (237aa)
carbonic anhydrase; K01673 carbonic anhydrase [EC:4.2.1.1]
Carbonic anhydrase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QR90_NITHX
Carbonic anhydrase {ECO:0000313|EMBL:ABE61257.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_666_curated_28
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34582..36192)
DNA (1611bp) protein (537aa)
NADH/Ubiquinone/plastoquinone (Complex I) n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ELL3_METSB
NADH/ubiquinone/plastoquinone
NADH/Ubiquinone/plastoquinone (Complex I) {ECO:0000313|EMBL:ACK50007.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_300_bf_scaffold_666_curated_29
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36189..37688)
DNA (1500bp) protein (500aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5); K05903 NADH dehydrogenase (quinone) [EC:1.6.99.5]
NADH dehydrogenase (Quinone) {ECO:0000313|EMBL:ACK50006.1}; EC=1.6.99.5 {ECO:0000313|EMBL:ACK50006.1};; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
NADH dehydrogenase (Quinone) n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ELL2_METSB
SCNpilot_cont_300_bf_scaffold_666_curated_30
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37688..38026)
DNA (339bp) protein (113aa)
NADH-ubiquinone oxidoreductase chain 4L n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ELL1_METSB
NADH-ubiquinone oxidoreductase chain 4L; K05567 multicomponent Na+:H+ antiporter subunit C
NADH-ubiquinone oxidoreductase chain 4L {ECO:0000313|EMBL:ACK50005.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
Displaying items 1-30 of 38 in total

View Taxonomy