ggKbase home page

SCNpilot_cont_300_bf_scaffold_508_curated

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_508_curated_1
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(92..253)
DNA (162bp) protein (54aa)
transposase n=1 Tax=Methylocystis rosea RepID=UPI00037E2D58
transposase
Transposase and inactivated derivatives-like protein {ECO:0000313|EMBL:ACK81047.1}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
SCNpilot_cont_300_bf_scaffold_508_curated_2
Mesorhizobium sp. L103C120A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(423..707)
DNA (285bp) protein (95aa)
UvrD/REP helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1287086 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C120A0.;"
UPI0003CE960B related cluster n=1 Tax=unknown RepID=UPI0003CE960B
SCNpilot_cont_300_bf_scaffold_508_curated_3
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(787..1182)
DNA (396bp) protein (132aa)
Transcriptional regulatory protein, ArsR family protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXZ7_9BRAD
Transcriptional regulatory protein, ArsR family protein {ECO:0000313|EMBL:EAQ35142.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
ArsR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_508_curated_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1179..1811)
DNA (633bp) protein (211aa)
alkyl hydroperoxide reductase; K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15]
1-Cys peroxiredoxin {ECO:0000313|EMBL:ABE61801.1}; EC=1.11.1.15 {ECO:0000313|EMBL:ABE61801.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
1-Cys peroxiredoxin n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPP6_NITHX
SCNpilot_cont_300_bf_scaffold_508_curated_5
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2144..3031
DNA (888bp) protein (296aa)
Beta-lactamase-like n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXZ9_9BRAD
Beta-lactamase-like {ECO:0000313|EMBL:EAQ35144.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
beta-lactamase-like
SCNpilot_cont_300_bf_scaffold_508_curated_6
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3074..4738
DNA (1665bp) protein (555aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SU88_NITWN
Uncharacterized protein {ECO:0000313|EMBL:ABA04153.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_508_curated_7
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4753..5532
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPP3_NITHX
hypothetical protein; K07090
Uncharacterized protein {ECO:0000313|EMBL:ABE61804.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_508_curated_8
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6470..7945
DNA (1476bp) protein (492aa)
Glucans biosynthesis protein G n=1 Tax=Rhodovulum sp. PH10 RepID=J6UA52_9RHOB
Glucans biosynthesis protein G {ECO:0000256|HAMAP-Rule:MF_01069}; Flags: Precursor;; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
mdoD; glucan biosynthesis protein D; K03670 periplasmic glucans biosynthesis protein
SCNpilot_cont_300_bf_scaffold_508_curated_9
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7945..10083
DNA (2139bp) protein (713aa)
Glucans biosynthesis glucosyltransferase H {ECO:0000256|HAMAP-Rule:MF_01072, ECO:0000256|SAAS:SAAS00010833}; EC=2.4.1.- {ECO:0000256|HAMAP-Rule:MF_01072, ECO:0000256|SAAS:SAAS00010802};; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
family 2 glycosyl transferase; K03669 membrane glycosyltransferase [EC:2.4.1.-]
Glucans biosynthesis glucosyltransferase H n=1 Tax=Rhodovulum sp. PH10 RepID=J6IXD0_9RHOB
SCNpilot_cont_300_bf_scaffold_508_curated_10
unknown

Not on your lists

10586..10741
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_508_curated_11
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10741..11544
DNA (804bp) protein (268aa)
TonB like protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X083_9BRAD
TonB like protein {ECO:0000313|EMBL:EAQ34358.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
TonB-like protein; K03832 periplasmic protein TonB
SCNpilot_cont_300_bf_scaffold_508_curated_12
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11804..12304
DNA (501bp) protein (167aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QU66_METTR
FecI-like protein {ECO:0000313|EMBL:EAQ36111.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
fec I like protein; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_508_curated_13
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12393..13355
DNA (963bp) protein (321aa)
FecR protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SUQ1_NITWN
FecR protein
FecR protein {ECO:0000313|EMBL:ABA03990.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_300_bf_scaffold_508_curated_14
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13469..15898
DNA (2430bp) protein (810aa)
TonB-dependent siderophore receptor n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SN48_NITWN
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
TonB-dependent siderophore receptor {ECO:0000313|EMBL:ABA06293.1}; Flags: Precursor;; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_300_bf_scaffold_508_curated_15
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16093..18573)
DNA (2481bp) protein (827aa)
TonB-dependent siderophore receptor n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SSZ2_NITWN
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
TonB-dependent siderophore receptor {ECO:0000313|EMBL:ABA04599.1}; Flags: Precursor;; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_300_bf_scaffold_508_curated_16
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18890..19885)
DNA (996bp) protein (332aa)
Probable FecR, iron siderophore sensor protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SQY3_NITWN
FecR, iron siderophore sensor protein; K07165 transmembrane sensor
Probable FecR, iron siderophore sensor protein {ECO:0000313|EMBL:ABA05308.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_300_bf_scaffold_508_curated_17
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19949..20479)
DNA (531bp) protein (177aa)
Fec I like protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SQY2_NITWN
fec I like protein; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Fec I like protein {ECO:0000313|EMBL:ABA05309.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_300_bf_scaffold_508_curated_18
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20725..23199)
DNA (2475bp) protein (825aa)
TonB-dependent siderophore receptor n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X080_9BRAD
TonB-dependent siderophore receptor {ECO:0000313|EMBL:EAQ34362.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_300_bf_scaffold_508_curated_19
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23413..24264)
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQ60_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61637.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_508_curated_20
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24484..25422)
DNA (939bp) protein (313aa)
Trancriptional regulatory protein, LysR family protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WRS5_9BRAD
Trancriptional regulatory protein, LysR family protein {ECO:0000313|EMBL:EAQ37313.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_508_curated_21
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25544..26425
DNA (882bp) protein (294aa)
Pirin n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SV08_NITWN
pirin; K06911
Pirin {ECO:0000313|EMBL:ABA03883.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_300_bf_scaffold_508_curated_22
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26530..28158)
DNA (1629bp) protein (543aa)
acyl-CoA synthetase (EC:2.3.1.86); K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
AMP-dependent synthetase and ligase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQ57_NITHX
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABE61640.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_508_curated_23
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28219..29367
DNA (1149bp) protein (383aa)
Extensin-like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQ56_NITHX
extensin-like
Extensin-like protein {ECO:0000313|EMBL:ABE61641.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_508_curated_24
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29474..30208)
DNA (735bp) protein (245aa)
ErfK/YbiS/YcfS/YnhG n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQ55_NITHX
ErfK/YbiS/YcfS/YnhG protein
ErfK/YbiS/YcfS/YnhG {ECO:0000313|EMBL:ABE61642.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_508_curated_25
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30499..31485
DNA (987bp) protein (329aa)
Mg2+ transporter protein, CorA-like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQ54_NITHX
Mg2+ transporter protein, CorA-like; K03284 magnesium transporter
Mg2+ transporter protein, CorA-like protein {ECO:0000313|EMBL:ABE61643.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_508_curated_26
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31875..32666)
DNA (792bp) protein (264aa)
short-chain dehydrogenase (EC:1.1.1.184)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WRT7_9BRAD
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EAQ37306.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_300_bf_scaffold_508_curated_27
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32663..33331)
DNA (669bp) protein (223aa)
pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5); K00275 pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000255|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000255|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000255|HAMAP-Rule:MF_01629}; Short=PNPOx {ECO:0000255|HAMAP-Rule:MF_01629};; Pyridoxal 5'-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_01629}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=PDXH_NITHX rbh
SCNpilot_cont_300_bf_scaffold_508_curated_28
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33423..33827
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQ50_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61647.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_508_curated_29
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34039..35010
DNA (972bp) protein (324aa)
Chaperone DnaJ-like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQ49_NITHX
chaperone DnaJ-like protein
Chaperone DnaJ-like protein {ECO:0000313|EMBL:ABE61648.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_508_curated_30
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35093..35926)
DNA (834bp) protein (278aa)
Alpha/beta hydrolase fold protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQ48_NITHX
alpha/beta hydrolase
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ABE61649.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Displaying items 1-30 of 45 in total

View Taxonomy