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SCNpilot_cont_300_bf_scaffold_825_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_825_curated_1
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..952)
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QN67_NITHX
hypothetical protein; K06915
Uncharacterized protein {ECO:0000313|EMBL:ABE62330.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_825_curated_2
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1434..2639
DNA (1206bp) protein (402aa)
Phage integrase family protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3WZG7_RHIFR
phage integrase family protein
Phage integrase family protein {ECO:0000313|EMBL:AFL49023.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_cont_300_bf_scaffold_825_curated_3
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3481..4338
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037679A5
Uncharacterized protein {ECO:0000313|EMBL:AHB50452.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_cont_300_bf_scaffold_825_curated_4
unknown

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comp(4287..4727)
DNA (441bp) protein (147aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_825_curated_5
unknown

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comp(5310..5483)
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_825_curated_6
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6236..9379)
DNA (3144bp) protein (1048aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X1G3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ33923.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
type III restriction-modification enzyme, helicase subunit
SCNpilot_cont_300_bf_scaffold_825_curated_7
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9379..12144)
DNA (2766bp) protein (922aa)
type III restriction-modification system StyLTI enzyme mod (EC:2.1.1.72)
Putative DNA methylase n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UHH8_RHIRD
Putative DNA methylase {ECO:0000313|EMBL:EGP54047.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
SCNpilot_cont_300_bf_scaffold_825_curated_8
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12265..12492
DNA (228bp) protein (76aa)
D-alanine transaminase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IRG9_9BRAD
D-alanine transaminase {ECO:0000313|EMBL:ERF86600.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
integrase
SCNpilot_cont_300_bf_scaffold_825_curated_9
unknown

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comp(12502..13329)
DNA (828bp) protein (276aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_825_curated_10
unknown

Not on your lists

comp(13372..13938)
DNA (567bp) protein (189aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_825_curated_11
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

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comp(13972..15600)
DNA (1629bp) protein (543aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037F6285
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
SCNpilot_cont_300_bf_scaffold_825_curated_12
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15597..15809)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J2S0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB32256.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
SCNpilot_cont_300_bf_scaffold_825_curated_13
unknown

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comp(17076..17228)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_825_curated_14
R_RIF_OD1_09_54_12, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

comp(17207..19213)
DNA (2007bp) protein (669aa)
hypothetical protein n=1 Tax=SAR324 cluster bacterium SCGC AAA240-J09 RepID=UPI0003168F7A
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_09_54_12_curated
SCNpilot_cont_300_bf_scaffold_825_curated_15
unknown

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comp(19210..19488)
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_825_curated_16
unknown

Not on your lists

comp(19485..19775)
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_825_curated_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20594..22963)
DNA (2370bp) protein (790aa)
Acriflavin resistance protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QN66_NITHX
acriflavin resistance protein
Acriflavin resistance protein {ECO:0000313|EMBL:ABE62331.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Displaying 17 items

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