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SCNpilot_cont_300_bf_scaffold_4403_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_4403_curated_1
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..391
DNA (390bp) protein (130aa)
Putative outer-membrane immunogenic protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIR4_NITHX
outer-membrane immunogenic protein precursor
Putative outer-membrane immunogenic protein {ECO:0000313|EMBL:ABE63883.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_4403_curated_2
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(533..748)
DNA (216bp) protein (72aa)
Cold-shock DNA-binding protein family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIR3_NITHX
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family)
Cold-shock DNA-binding protein family {ECO:0000313|EMBL:ABE63884.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_4403_curated_3
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(988..1842)
DNA (855bp) protein (285aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; 23S rRNA m6A2030 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Ribosomal RNA large subunit methyltransferase J n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SPL0_NITWN
hypothetical protein; K07115
SCNpilot_cont_300_bf_scaffold_4403_curated_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2028..2717)
DNA (690bp) protein (230aa)
ribonuclease T2; K01166 ribonuclease T2 [EC:3.1.27.1]
Ribonuclease T2 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIR1_NITHX
Ribonuclease T2 {ECO:0000313|EMBL:ABE63886.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_4403_curated_5
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2959..3414)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIR0_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63887.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_4403_curated_6
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3751..4044
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIQ9_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63888.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_4403_curated_7
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4098..4628
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIQ8_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63889.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_4403_curated_8
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4665..6356)
DNA (1692bp) protein (564aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hisS; histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21]
histidyl-tRNA synthase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034D2D0B
SCNpilot_cont_300_bf_scaffold_4403_curated_9
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6597..8258)
DNA (1662bp) protein (554aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SPK3_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA05788.1}; Flags: Precursor;; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_300_bf_scaffold_4403_curated_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8270..8713)
DNA (444bp) protein (148aa)
TadE-like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIQ6_NITHX
TadE-like protein
TadE-like protein {ECO:0000313|EMBL:ABE63891.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_4403_curated_11
unknown

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comp(8915..9082)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4403_curated_12
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9093..9500)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NGB0_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF20123.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
SCNpilot_cont_300_bf_scaffold_4403_curated_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9639..10100
DNA (462bp) protein (154aa)
beta alanine--pyruvate transaminase (EC:2.6.1.18); K00822 beta-alanine--pyruvate transaminase [EC:2.6.1.18]
Aminotransferase {ECO:0000313|EMBL:ABE63892.1}; EC=2.6.1.- {ECO:0000313|EMBL:ABE63892.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Aminotransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIQ5_NITHX
Displaying 13 items

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