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SCNpilot_cont_300_bf_scaffold_970_curated

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_970_curated_1
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(306..533)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DHJ3_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGT75302.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
SCNpilot_cont_300_bf_scaffold_970_curated_2
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(643..1218)
DNA (576bp) protein (192aa)
Integrase, catalytic region n=2 Tax=Nitrobacter sp. Nb-311A RepID=A3WWY1_9BRAD
Integrase, catalytic region {ECO:0000313|EMBL:EAQ35508.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
integrase catalytic subunit
SCNpilot_cont_300_bf_scaffold_970_curated_3
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1371..2399
DNA (1029bp) protein (343aa)
UPI0003CF1096 related cluster n=2 Tax=unknown RepID=UPI0003CF1096
Transposase IS110 {ECO:0000313|EMBL:ESY79471.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
transposase IS116/IS110/IS902 family protein
SCNpilot_cont_300_bf_scaffold_970_curated_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2863..3315
DNA (453bp) protein (151aa)
Ion transport 2 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLY4_NITHX
Ion transport 2
Ion transport 2 {ECO:0000313|EMBL:ABE62763.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_970_curated_5
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4730..4981
DNA (252bp) protein (84aa)
Uncharacterized protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BQG8_OLICM
hypothetical protein; K08982 putative membrane protein
Uncharacterized protein {ECO:0000313|EMBL:AEI07825.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_300_bf_scaffold_970_curated_6
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5030..5593
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JHY7_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB63458.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_cont_300_bf_scaffold_970_curated_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6484..7338)
DNA (855bp) protein (285aa)
H+transporting two-sector ATPase subunit gamma; K02115 F-type H+-transporting ATPase subunit gamma [EC:3.6.3.14]
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037A0E80
H+transporting two-sector ATPase gamma subunit {ECO:0000313|EMBL:ACE99603.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_cont_300_bf_scaffold_970_curated_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7338..8885)
DNA (1548bp) protein (516aa)
F0F1 ATP synthase subunit alpha; K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14]
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
F0F1 ATP synthase subunit alpha n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD23C
SCNpilot_cont_300_bf_scaffold_970_curated_9
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8860..9618)
DNA (759bp) protein (253aa)
ATP synthase subunit b n=3 Tax=Azotobacter vinelandii RepID=C1DEJ7_AZOVD
H+-transporting two-sector ATPase, B/B subunit
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=322710 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii (strain DJ / ATCC BAA-1303).;"
SCNpilot_cont_300_bf_scaffold_970_curated_10
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9634..9879)
DNA (246bp) protein (82aa)
F0F1 ATP synthase subunit C n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TL55_TISMK
F0F1 ATP synthase subunit C
F0F1 ATP synthase subunit C {ECO:0000313|EMBL:AFK53493.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_cont_300_bf_scaffold_970_curated_11
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9866..10570)
DNA (705bp) protein (235aa)
atpB; ATP synthase subunit a 2; K02108 F-type H+-transporting ATPase subunit a [EC:3.6.3.14]
ATP synthase subunit a n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J8F5_HYPSM
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
SCNpilot_cont_300_bf_scaffold_970_curated_12
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10567..10866)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IJC4_9BURK
N-ATPase, AtpR subunit {ECO:0000313|EMBL:KGS00117.1}; TaxID=1434929 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei ABCPW 111.;"
SCNpilot_cont_300_bf_scaffold_970_curated_13
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10863..11162)
DNA (300bp) protein (100aa)
Putative H(+)-transporting ATP synthase 1 protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAB0_9SPHN
Putative F0F1-ATPase subunit {ECO:0000313|EMBL:KDM65380.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
F0F1-ATPase (fragment); K02116 ATP synthase protein I
SCNpilot_cont_300_bf_scaffold_970_curated_14
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11159..11581)
DNA (423bp) protein (141aa)
atpC; ATP synthase subunit epsilon 2; K02114 F-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14]
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000374E21A
ATP synthase epsilon chain 2 {ECO:0000313|EMBL:CCB65655.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_cont_300_bf_scaffold_970_curated_15
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11541..13016)
DNA (1476bp) protein (492aa)
F0F1 ATP synthase subunit beta (EC:3.6.3.14); K02112 F-type H+-transporting ATPase subunit beta [EC:3.6.3.14]
ATP synthase subunit beta 3 {ECO:0000255|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000255|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta 3 {ECO:0000255|HAMAP-Rule:MF_01347}; F-ATPase subunit beta 3 {ECO:0000255|HAMAP-Rule:MF_01347}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
ATP synthase subunit beta 3 n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=ATPB3_BURXL rbh
SCNpilot_cont_300_bf_scaffold_970_curated_16
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13368..13535
DNA (168bp) protein (56aa)
phosphoenolpyruvate synthase (EC:2.7.9.2); K01007 pyruvate, water dikinase [EC:2.7.9.2]
Phosphoenolpyruvate synthase n=1 Tax=Methylocystis sp. (strain SC2) RepID=I4EAH4_METSZ
Phosphoenolpyruvate synthase {ECO:0000313|EMBL:CCD31979.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_300_bf_scaffold_970_curated_17
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13734..14807
DNA (1074bp) protein (358aa)
Phosphoenolpyruvate synthase {ECO:0000256|PIRNR:PIRNR000854}; Short=PEP synthase {ECO:0000256|PIRNR:PIRNR000854};; EC=2.7.9.2 {ECO:0000256|PIRNR:PIRNR000854};; Pyruvate, water dikinase {ECO:0000256|PIRNR:PIRNR000854}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
phosphoenolpyruvate synthase (EC:2.7.9.2); K01007 pyruvate, water dikinase [EC:2.7.9.2]
Phosphoenolpyruvate synthase n=1 Tax=Methylocystis sp. (strain SC2) RepID=I4EAQ5_METSZ
SCNpilot_cont_300_bf_scaffold_970_curated_18
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14641..15222)
DNA (582bp) protein (194aa)
Cytochrome B561 n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCT0_HYPSM
cytochrome B561
Cytochrome B561 {ECO:0000313|EMBL:CCB66448.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_cont_300_bf_scaffold_970_curated_19
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15618..16166)
DNA (549bp) protein (183aa)
Cytochrome B561 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QM55_NITHX
cytochrome B561
Cytochrome B561 {ECO:0000313|EMBL:ABE62692.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_970_curated_20
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16195..16467)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QM54_NITHX
Uncharacterized protein {ECO:0000313|EMBL:CEG09828.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_970_curated_21
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16617..16931
DNA (315bp) protein (105aa)
Propeptide, PepSY amd peptidase M4 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QM53_NITHX
peptidase
Propeptide, PepSY amd peptidase M4 {ECO:0000313|EMBL:ABE62694.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_970_curated_22
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16931..17596
DNA (666bp) protein (222aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QM52_NITHX
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABE62695.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_970_curated_23
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17593..19041
DNA (1449bp) protein (483aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QM51_NITHX
periplasmic sensor signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_970_curated_24
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19038..19316
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QM50_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62697.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_970_curated_25
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19331..20545
DNA (1215bp) protein (405aa)
Secretion protein HlyD n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QM49_NITHX
secretion protein HlyD; K15727 cobalt-zinc-cadmium resistance protein CzcB
Secretion protein HlyD {ECO:0000313|EMBL:ABE62698.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_970_curated_26
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20547..23786
DNA (3240bp) protein (1080aa)
Heavy metal efflux pump CzcA n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QM48_NITHX
Heavy metal efflux pump CzcA {ECO:0000313|EMBL:ABE62699.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
heavy metal efflux pump CzcA; K15726 cobalt-zinc-cadmium resistance protein CzcA
SCNpilot_cont_300_bf_scaffold_970_curated_27
unknown

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24313..24867
DNA (555bp) protein (185aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_970_curated_28
unknown

Not on your lists

25075..25224
DNA (150bp) protein (50aa)

This feature has no annotations

Displaying 28 items

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