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SCNpilot_cont_300_bf_scaffold_678_curated

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_678_curated_1
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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939..2267
DNA (1329bp) protein (443aa)
O-antigen polymerase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WUG6_9BRAD
O-antigen polymerase {ECO:0000313|EMBL:EAQ36373.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
O-antigen polymerase
SCNpilot_cont_300_bf_scaffold_678_curated_2
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2543..3652)
DNA (1110bp) protein (370aa)
acyltransferase 3 n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017465B2
Uncharacterized protein {ECO:0000313|EMBL:KJC36602.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
acyltransferase 3
SCNpilot_cont_300_bf_scaffold_678_curated_3
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4152..5213
DNA (1062bp) protein (354aa)
Type IV secretion system protein VirB10 n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H6S8_9BRAD
Type IV secretion system protein VirB10 {ECO:0000313|EMBL:ERF85537.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
putative oxidoreductase
SCNpilot_cont_300_bf_scaffold_678_curated_4
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5708..6808
DNA (1101bp) protein (367aa)
Butyryl-CoA dehydrogenase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IRW5_9BRAD
Erythromycin biosynthesis sensory transduction protein eryC1 {ECO:0000313|EMBL:KJC36606.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
DegT family aminotransferase
SCNpilot_cont_300_bf_scaffold_678_curated_5
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6915..8246
DNA (1332bp) protein (444aa)
Putative polysaccharide biosynthesis protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I9Y5_CALAS
Uncharacterized protein {ECO:0000313|EMBL:KEQ02451.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
putative polysaccharide biosynthesis protein
SCNpilot_cont_300_bf_scaffold_678_curated_6
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8243..8857
DNA (615bp) protein (205aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hisH; imidazole glycerol phosphate synthase subunit HisH (EC:2.4.2.-); K02501 glutamine amidotransferase [EC:2.4.2.-]
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Rhizobium sp. CF142 RepID=J2L4V8_9RHIZ
SCNpilot_cont_300_bf_scaffold_678_curated_7
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8857..9624
DNA (768bp) protein (256aa)
imidazole glycerol phosphate synthase,subunit (EC:4.1.3.-); K02500 cyclase [EC:4.1.3.-]
Imidazoleglycerol-phosphate synthase n=1 Tax=Rhizobium sp. CF142 RepID=J1SS45_9RHIZ
Imidazole glycerol phosphate synthase {ECO:0000313|EMBL:KEQ02449.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
SCNpilot_cont_300_bf_scaffold_678_curated_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9624..10757
DNA (1134bp) protein (378aa)
Putative lipopolysaccharide synthesis protein n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1ML41_RHIL3
lipopolysaccharide synthesis protein
Putative lipopolysaccharide synthesis protein {ECO:0000313|EMBL:CAK06313.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_cont_300_bf_scaffold_678_curated_9
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10754..12115
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J1T8L2_9RHIZ
Bradyrhizobium elkanii strain UASWS1015 Contig157, whole genome shotgun sequence {ECO:0000313|EMBL:KIU52576.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
transmembrane protein
SCNpilot_cont_300_bf_scaffold_678_curated_10
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12455..13543
DNA (1089bp) protein (363aa)
Bll6009 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89HI2_BRADU
hypothetical protein rbh
Bradyrhizobium elkanii strain UASWS1015 Contig157, whole genome shotgun sequence {ECO:0000313|EMBL:KIU52571.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_cont_300_bf_scaffold_678_curated_11
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13569..14435
DNA (867bp) protein (289aa)
Biopolymer transporter TolQ n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IRS3_9BRAD
Biopolymer transporter TolQ {ECO:0000313|EMBL:ERF85499.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_678_curated_12
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14432..15001
DNA (570bp) protein (190aa)
Branched-chain amino acid transport system substrate-binding protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1INL1_9BRAD
Acetyltransferase {ECO:0000313|EMBL:KJC56297.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
acetyltransferase
SCNpilot_cont_300_bf_scaffold_678_curated_13
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14991..15848
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HM31_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig157, whole genome shotgun sequence {ECO:0000313|EMBL:KIU52573.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
ubiquinone/menaquinone biosynthesis methylase-like protein
SCNpilot_cont_300_bf_scaffold_678_curated_14
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15845..16774
DNA (930bp) protein (310aa)
galE; UDP-glucose 4-epimerase (EC:5.1.3.2); K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] rbh
GalE protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89HI4_BRADU
UDP-glucose 4-epimerase {ECO:0000313|EMBL:KJC36627.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCNpilot_cont_300_bf_scaffold_678_curated_15
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16771..17958
DNA (1188bp) protein (396aa)
Peptide/nickel transport system ATP-binding protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IRS7_9BRAD
Peptide/nickel transport system ATP-binding protein {ECO:0000313|EMBL:ERF85504.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
glycosyl transferase family protein rbh
SCNpilot_cont_300_bf_scaffold_678_curated_16
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18059..19006)
DNA (948bp) protein (316aa)
UDP-glucose 4-epimerase (EC:5.1.3.2); K01784 UDP-glucose 4-epimerase [EC:5.1.3.2]
Bll5923 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89HR7_BRADU
UDP-glucose 4-epimerase {ECO:0000313|EMBL:KJC34317.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
SCNpilot_cont_300_bf_scaffold_678_curated_17
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19003..20223)
DNA (1221bp) protein (407aa)
Glycosyl transferase n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G3Z7_9BRAD
glycosyl transferase family protein
Glycosyl transferase {ECO:0000313|EMBL:BAL75484.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_cont_300_bf_scaffold_678_curated_18
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20351..21436
DNA (1086bp) protein (362aa)
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
GDP-mannose 4,6-dehydratase (EC:4.2.1.47); K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47]
GDP-mannose 4,6-dehydratase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037E2FBF
SCNpilot_cont_300_bf_scaffold_678_curated_19
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21417..22361
DNA (945bp) protein (315aa)
fcl; GDP-fucose synthetase; K02377 GDP-L-fucose synthase [EC:1.1.1.271] rbh
GDP-L-fucose synthase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H6U6_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig111, whole genome shotgun sequence {ECO:0000313|EMBL:KIU54297.1}; Flags: Fragment;; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_cont_300_bf_scaffold_678_curated_20
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22669..23511)
DNA (843bp) protein (281aa)
Glycosyl transferase, family 4 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJM4_NITHX
glycosyl transferase family protein
Glycosyl transferase, family 4 {ECO:0000313|EMBL:ABE63573.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_678_curated_21
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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24251..24448
DNA (198bp) protein (66aa)
Mobile element protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MLF3_9SPHN
Mobile element protein {ECO:0000313|EMBL:CCW17781.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_678_curated_22
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24860..26902
DNA (2043bp) protein (681aa)
Bll5925 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89HR5_BRADU
capsular polysaccharide biosynthesis protein; K13013 O-antigen biosynthesis protein WbqV rbh
Bll5925 protein {ECO:0000313|EMBL:BAC51190.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCNpilot_cont_300_bf_scaffold_678_curated_23
Asticcacaulis sp. YBE204, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27096..27653)
DNA (558bp) protein (186aa)
nadR; nicotinamide-nucleotide adenylyltransferase (EC:2.7.7.1); K13522 bifunctional NMN adenylyltransferase/nudix hydrolase [EC:2.7.7.1 3.6.1.-]
hypothetical protein n=1 Tax=Methyloversatilis universalis RepID=UPI000382758D
Uncharacterized protein {ECO:0000313|EMBL:ESQ80762.1}; TaxID=1282363 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. YBE204.;"
SCNpilot_cont_300_bf_scaffold_678_curated_24
unknown

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comp(27741..27881)
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_678_curated_25
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27919..28266)
DNA (348bp) protein (116aa)
UDP-glucose 6-dehydrogenase (EC:1.1.1.22); K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22]
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:ABE63534.1}; EC=1.1.1.22 {ECO:0000313|EMBL:ABE63534.1};; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
UDP-glucose 6-dehydrogenase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJR3_NITHX
Displaying 25 items

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