ggKbase home page

SCNpilot_cont_300_bf_scaffold_890_curated

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_890_curated_1
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66..1094
DNA (1029bp) protein (343aa)
Respiratory nitrate reductase chaperone NarJ n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHX2_NITHX
nitrate reductase molybdenum cofactor assembly chaperone
Respiratory nitrate reductase chaperone NarJ {ECO:0000313|EMBL:ABE64175.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_890_curated_2
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1129..1806
DNA (678bp) protein (226aa)
nitrate reductase subunit gamma; K00374 nitrate reductase 1, gamma subunit [EC:1.7.99.4]
Respiratory nitrate reductase gamma subunit n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHX3_NITHX
Respiratory nitrate reductase gamma subunit {ECO:0000313|EMBL:ABE64174.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_890_curated_3
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2069..3319
DNA (1251bp) protein (417aa)
Major facilitator superfamily MFS_1 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHX4_NITHX
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABE64173.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_890_curated_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3525..4511
DNA (987bp) protein (329aa)
C4-dicarboxylate transporter/malic acid transport protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHX5_NITHX
C4-dicarboxylate transporter/malic acid transport protein
C4-dicarboxylate transporter/malic acid transport protein {ECO:0000313|EMBL:ABE64172.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_890_curated_5
Asticcacaulis benevestitus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5461..6705
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. YBE204 RepID=V4NKN8_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ89925.1}; TaxID=1121022 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896.;"
phage integrase family protein
SCNpilot_cont_300_bf_scaffold_890_curated_6
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7087..7983
DNA (897bp) protein (299aa)
Peptidase M, neutral zinc metallopeptidase, zinc-binding site n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IUP4_POLGS
peptidase M, neutral zinc metallopeptidase, zinc-binding site
Peptidase M, neutral zinc metallopeptidase, zinc-binding site {ECO:0000313|EMBL:ADZ69098.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_300_bf_scaffold_890_curated_7
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8209..8955
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VIZ2_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ11836.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_890_curated_8
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8936..9730
DNA (795bp) protein (265aa)
Phage integrase family protein n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0SR24_XANCT
Phage integrase family protein {ECO:0000313|EMBL:CCP38532.1}; TaxID=1261556 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. translucens DSM 18974.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_890_curated_9
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9812..10024)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EPP4_METSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK50898.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_300_bf_scaffold_890_curated_10
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10643..12373
DNA (1731bp) protein (577aa)
Partitioning protein n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LN71_9PROT
Partitioning protein {ECO:0000313|EMBL:EKF06382.1}; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
partitioning protein; K03497 chromosome partitioning protein, ParB family rbh
SCNpilot_cont_300_bf_scaffold_890_curated_11
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12974..13315
DNA (342bp) protein (114aa)
hypothetical protein
hypothetical protein id=12555694 bin=CNBR_ACIDO species=Acidithiobacillus ferrooxidans genus=Acidithiobacillus taxon_order=Acidithiobacillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Uncharacterized protein {ECO:0000313|EMBL:EGO93173.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
SCNpilot_cont_300_bf_scaffold_890_curated_12
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13374..15029
DNA (1656bp) protein (552aa)
Relaxase/mobilization nuclease family protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2A6J5_RHIET
Relaxase/mobilization nuclease family protein {ECO:0000313|EMBL:EGE59912.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
Relaxase/mobilization nuclease family protein
SCNpilot_cont_300_bf_scaffold_890_curated_13
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15034..18927)
DNA (3894bp) protein (1298aa)
Uncharacterized protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EPQ2_METSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK50906.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_300_bf_scaffold_890_curated_14
unknown

Not on your lists

comp(19220..19879)
DNA (660bp) protein (220aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_890_curated_15
unknown

Not on your lists

comp(19899..20597)
DNA (699bp) protein (233aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_890_curated_16
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20764..21177)
DNA (414bp) protein (138aa)
XRE family transcriptional regulator n=2 Tax=Rhodospirillum rubrum RepID=G2TDC7_RHORU
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ABC24192.1}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
SCNpilot_cont_300_bf_scaffold_890_curated_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22449..22682
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQM0_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61477.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_890_curated_18
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22715..22888
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EPQ4_METSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK50908.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_300_bf_scaffold_890_curated_19
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22907..23401)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QGW4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EIG59020.1}; Flags: Precursor;; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_890_curated_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23417..24151)
DNA (735bp) protein (245aa)
Glutaredoxin n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2L821_9PROT
Membrane protein {ECO:0000313|EMBL:KIZ36520.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
glutaredoxin
SCNpilot_cont_300_bf_scaffold_890_curated_21
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24442..24738)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EPQ6_METSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK50910.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_300_bf_scaffold_890_curated_22
Cyanothece sp. ATCC 51142, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(24780..25676)
DNA (897bp) protein (299aa)
ATPase n=1 Tax=Acaryochloris sp. CCMEE 5410 RepID=UPI0002483BF3
putative ATPase
Putative ATPase {ECO:0000313|EMBL:ACB51001.1}; TaxID=43989 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain ATCC 51142).;"
SCNpilot_cont_300_bf_scaffold_890_curated_23
Jannaschia aquimarina, Jannaschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25721..27610)
DNA (1890bp) protein (630aa)
hypothetical protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI000381D7F6
TraG_2 protein {ECO:0000313|EMBL:KIT14715.1}; TaxID=935700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Jannaschia.;" source="Jannaschia aquimarina.;"
TraG/TraD family protein; K03205 type IV secretion system protein VirD4
SCNpilot_cont_300_bf_scaffold_890_curated_24
Sulfitobacter sp. NAS-14.1, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27943..28275
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Sulfitobacter sp. NAS-14.1 RepID=A3T3G0_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAP78470.1}; TaxID=314267 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter sp. NAS-14.1.;"
SCNpilot_cont_300_bf_scaffold_890_curated_25
Jannaschia aquimarina, Jannaschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28265..29650
DNA (1386bp) protein (462aa)
Relaxase/mobilization nuclease domain n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y577_NITMU
Jannaschia aquimarina strain GSW-M26 jaqu_contig000066, whole genome shotgun sequence {ECO:0000313|EMBL:KIT14717.1}; TaxID=935700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Jannaschia.;" source="Jannaschia aquimarina.;"
relaxase/mobilization nuclease domain-containing protein
SCNpilot_cont_300_bf_scaffold_890_curated_26
unknown

Not on your lists

comp(29658..30212)
DNA (555bp) protein (185aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_890_curated_27
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30234..31067)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B8R4_PARDP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL71908.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_cont_300_bf_scaffold_890_curated_28
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31064..32914)
DNA (1851bp) protein (617aa)
Helicase domain protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B8R3_PARDP
helicase
Helicase domain protein {ECO:0000313|EMBL:ABL71907.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_cont_300_bf_scaffold_890_curated_29
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32982..34307)
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B8R2_PARDP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL71906.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_cont_300_bf_scaffold_890_curated_30
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34315..34779)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B8R1_PARDP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL71905.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
Displaying items 1-30 of 40 in total

View Taxonomy