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SCNpilot_cont_300_bf_scaffold_1325_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1325_curated_1
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1756
DNA (1755bp) protein (585aa)
ileS; isoleucyl-tRNA synthetase (EC:6.1.1.5); K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5]
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Isoleucine--tRNA ligase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIQ0_NITHX
SCNpilot_cont_300_bf_scaffold_1325_curated_2
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1729..2250
DNA (522bp) protein (174aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
lipoprotein signal peptidase; K03101 signal peptidase II [EC:3.4.23.36]
Lipoprotein signal peptidase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X1I8_9BRAD
SCNpilot_cont_300_bf_scaffold_1325_curated_3
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2329..3048
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIP8_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63899.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1325_curated_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3108..4625
DNA (1518bp) protein (506aa)
Peptidase M16-like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIP7_NITHX
peptidase M16-like
Peptidase M16-like protein {ECO:0000313|EMBL:ABE63900.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1325_curated_5
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4622..6019
DNA (1398bp) protein (466aa)
Peptidase M16-like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIP6_NITHX
peptidase M16-like
Peptidase M16-like protein {ECO:0000313|EMBL:ABE63901.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1325_curated_6
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6284..6703
DNA (420bp) protein (140aa)
Class I peptide chain release factor n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIP5_NITHX
peptidyl-tRNA hydrolase domain-containing protein; K15034 ribosome-associated protein
Class I peptide chain release factor {ECO:0000313|EMBL:ABA05800.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_300_bf_scaffold_1325_curated_7
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6985..7380
DNA (396bp) protein (132aa)
lactoylglutathione lyase; K01759 lactoylglutathione lyase [EC:4.4.1.5]
lactoylglutathione lyase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000302C345
Lactoylglutathione lyase {ECO:0000313|EMBL:ERF83186.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
SCNpilot_cont_300_bf_scaffold_1325_curated_8
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7427..7975
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D4J1_BRAJP
Uncharacterized protein {ECO:0000313|EMBL:BAR58684.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1325_curated_9
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8009..10135
DNA (2127bp) protein (709aa)
2-keto-gluconate dehydrogenase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002F10458
Bradyrhizobium elkanii strain UASWS1015 Contig174, whole genome shotgun sequence {ECO:0000313|EMBL:KIU49184.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
2-keto-gluconate dehydrogenase rbh
SCNpilot_cont_300_bf_scaffold_1325_curated_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10237..12042
DNA (1806bp) protein (602aa)
DNA mismatch repair protein MutL n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=MUTL_NITHX rbh
DNA mismatch repair protein MutL {ECO:0000255|HAMAP-Rule:MF_00149}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
mutL; DNA mismatch repair protein; K03572 DNA mismatch repair protein MutL
SCNpilot_cont_300_bf_scaffold_1325_curated_11
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12221..12775)
DNA (555bp) protein (185aa)
methyltransferase (EC:2.1.1.-); K08316 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
Putative methyltransferase {ECO:0000313|EMBL:CCD94053.1}; EC=2.1.1.- {ECO:0000313|EMBL:CCD94053.1};; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
Putative methyltransferase n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SIM6_9BRAD
SCNpilot_cont_300_bf_scaffold_1325_curated_12
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12779..14881)
DNA (2103bp) protein (701aa)
pseudouridine synthase, Rsu; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Pseudouridine synthase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIP1_NITHX
SCNpilot_cont_300_bf_scaffold_1325_curated_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15013..15438
DNA (426bp) protein (142aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
tRNA-adenosine deaminase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIP0_NITHX
zinc-binding CMP/dCMP deaminase
Displaying 13 items

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