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This organism can only be binned in the context of its binning project 2019_SCN_bioreactor_t3_planktonic. Please contact the project owner (coralline@gmail.com) to become a member and gain access.

SCNpilot_cont_300_bf_scaffold_2555_curated_3

Organism: scnpilot_dereplicated_Nitrobacter_2

near complete RP 42 / 55 MC: 1 BSCG 42 / 51 MC: 2 ASCG 11 / 38
Location: 950..1978

Top 3 Functional Annotations

Value Algorithm Source
holA; DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7] similarity KEGG
DB: KEGG
  • Identity: 89.5
  • Coverage: 342.0
  • Bit_score: 587
  • Evalue 2.00e-165
DNA polymerase III, delta subunit {ECO:0000313|EMBL:ABE61001.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ABE61001.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.5
  • Coverage: 342.0
  • Bit_score: 587
  • Evalue 9.00e-165
DNA polymerase III, delta subunit n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRZ6_NITHX similarity UNIREF
DB: UNIREF100
  • Identity: 89.5
  • Coverage: 342.0
  • Bit_score: 587
  • Evalue 6.40e-165

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Taxonomy

Nitrobacter hamburgensis → Nitrobacter → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1029
ATGGTCGCGCTGCGTGGAAAAGACGTCGACAGCTTTCTCGCCCGGCCCGATCCGGACCGCCCGATCATCCTGCTCTACGGCCCCGACGCCGGTCTCGTGCGCGAGCGCGCGGACGCCTTGACGGCGTCTGCCGTCGATGACGTCAACGATCCGTTCTCGCTGGTGCGACTCGATGGCGACGAACTCGCCGCCGAGCCGTCGCGTCTCGTCGACGAAGCCATGACGGTGCCGCTGTTCGGCGGCCGCCGCGCCCTCCGCGTCAAGGCCGGATCGCGCAGTTTCGCCAGCGGCGTCGAGACGCTGGCGGACTCCGATATCCGGGACTGCCGGATCGTGATTGAGGCCGGCGAGCTGCGGCCGGAGGCGCCGCTGCGCAAGGCCTGCGAGCGCGCGAAGAATGCGGTGGCGATCGCCTGCTACCCCGACACCGAGCGCGATCTCGCACGCCTGATCGACGATGAGCTGCGCGTCTCCGACCTGAAGATCGCACAGGATGCGCGCGCCATGCTGACATCGCTGCTTGGCGGTGACCGTCAGGCCTCGCGCAACGAACTGCGCAAGATCGCGCTTTATGCCCATGGTGCGCGCGAGATCACGCTCGAGGACGTGATGGCGGTGGTGTCGGACGCCTCCGACTTCAAGCTCGATCCCGTCGTCGACGCCGCGTTTGCGGGACAGCCCGCCATCGTCGAAACCGAATTCGCCAAGGCCATGGTCGCCGGCACTTATCCGGGCCTCGCCATTTCGGCCGCGCAGCGTCAGGTCGCCGCTTTGCACAAGGCGGCGCTTCTGATGGAAGGCGGCGCGTCGGCCCCGTCAGCCGCCGAGGGCGGATTTCCGCGGTTGCATTTTTCGCGCAAGGCGGCGGTGGAAACGGCGTTGCGCAATTTCAGCGCCGCGCGGCTGGCTCAGGTGATGGATCAGCTCGCGATCGCGGCGCTCGATGCGCGCAAGCATTCGGCGCTGGCCGCCGTCATCGCCCAGCGCGCGCTGATGTCGATCGCGGTGAATGCAAGGCGGCGGGGATAG
PROTEIN sequence
Length: 343
MVALRGKDVDSFLARPDPDRPIILLYGPDAGLVRERADALTASAVDDVNDPFSLVRLDGDELAAEPSRLVDEAMTVPLFGGRRALRVKAGSRSFASGVETLADSDIRDCRIVIEAGELRPEAPLRKACERAKNAVAIACYPDTERDLARLIDDELRVSDLKIAQDARAMLTSLLGGDRQASRNELRKIALYAHGAREITLEDVMAVVSDASDFKLDPVVDAAFAGQPAIVETEFAKAMVAGTYPGLAISAAQRQVAALHKAALLMEGGASAPSAAEGGFPRLHFSRKAAVETALRNFSAARLAQVMDQLAIAALDARKHSALAAVIAQRALMSIAVNARRRG*