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SCNpilot_expt_300_bf_scaffold_351_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_351_curated_1
unknown

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1..90
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_351_curated_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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548..2557
DNA (2010bp) protein (670aa)
Flagellar hook-associated protein FliD n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJM7_9PROT
Flagellar hook protein FliD {ECO:0000313|EMBL:KIO48055.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
flagellar hook-associated 2-like; K02407 flagellar hook-associated protein 2
SCNpilot_expt_300_bf_scaffold_351_curated_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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2572..3069
DNA (498bp) protein (166aa)
Flagellar biosynthesis protein FliS n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK91_9PROT
Flagellar biosynthesis protein FliS {ECO:0000313|EMBL:CCU62983.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
flagellar protein FliS; K02422 flagellar protein FliS
SCNpilot_expt_300_bf_scaffold_351_curated_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3066..3416
DNA (351bp) protein (117aa)
Flagellar biosynthesis protein FliT n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJQ2_9PROT
Flagellar protein FliT {ECO:0000313|EMBL:KIO48057.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
flagellar protein FliT; K02423 flagellar protein FliT
SCNpilot_expt_300_bf_scaffold_351_curated_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3528..4643
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHY6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62981.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_351_curated_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4627..5046
DNA (420bp) protein (140aa)
Flagellar biosynthesis protein FlhB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DUC0_9PROT
Flagellar biosynthetic protein FlhB {ECO:0000313|EMBL:KIO48059.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
type III secretion exporter
SCNpilot_expt_300_bf_scaffold_351_curated_7
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5102..6019)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIK9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62447.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_expt_300_bf_scaffold_351_curated_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6157..10008)
DNA (3852bp) protein (1284aa)
ATP-dependent helicase HrpA; K03578 ATP-dependent helicase HrpA [EC:3.6.4.13]
Macromolecule metabolism macromolecule synthesis, modification dna-replication,repair,restriction-modification n=1 Tax=Nitrosospira sp. APG3 RepID=M5DSR9_9PROT
Macromolecule metabolism macromolecule synthesis, modification dna-replication,repair,restriction-modification {ECO:0000313|EMBL:CCU62445.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_expt_300_bf_scaffold_351_curated_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10320..10496
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIG3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62444.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_expt_300_bf_scaffold_351_curated_10
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10988..12121)
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y978_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB74693.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_300_bf_scaffold_351_curated_11
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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12491..14428
DNA (1938bp) protein (646aa)
Subtilase family protein n=1 Tax=Acaryochloris marina (strain MBIC 11017) RepID=B0CB52_ACAM1
Uncharacterized protein {ECO:0000313|EMBL:CCH76933.1}; TaxID=1194083 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;"
peptidase S8/S53 subtilisin kexin sedolisin
SCNpilot_expt_300_bf_scaffold_351_curated_12
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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14450..17863
DNA (3414bp) protein (1138aa)
hypothetical protein n=1 Tax=Leptolyngbya boryana RepID=UPI00035C2C56
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU60468.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_300_bf_scaffold_351_curated_13
Nitrospina gracilis, Nitrospina, Nitrospinales, Nitrospinia, Nitrospinae, Bacteria

Not on your lists

17923..21303
DNA (3381bp) protein (1127aa)
hypothetical protein n=1 Tax=Leptolyngbya boryana RepID=UPI0003763279
Uncharacterized protein {ECO:0000313|EMBL:CCQ90844.1}; TaxID=1266370 species="Bacteria; Nitrospinae; Nitrospinia; Nitrospinales; Nitrospinaceae; Nitrospina.;" source="Nitrospina gracilis (strain 3/211).;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_351_curated_14
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

21325..27093
DNA (5769bp) protein (1923aa)
hypothetical protein n=1 Tax=Leptolyngbya boryana RepID=UPI00037C0D12
Uncharacterized protein {ECO:0000313|EMBL:ABQ91499.1}; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_351_curated_15
Leptolyngbya sp. PCC 7375, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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27090..28997
DNA (1908bp) protein (636aa)
hypothetical protein n=1 Tax=Leptolyngbya boryana RepID=UPI0003604204
Uncharacterized protein {ECO:0000313|EMBL:EKV01582.1}; TaxID=102129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. PCC 7375.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_351_curated_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29093..30103
DNA (1011bp) protein (337aa)
zinc-containing alcohol dehydrogenase superfamily protein; K12957 uncharacterized zinc-type alcohol dehydrogenase-like protein [EC:1.-.-.-]
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI00036473BF
Alcohol dehydrogenase {ECO:0000313|EMBL:KIO47943.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_300_bf_scaffold_351_curated_17
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(30159..30551)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Cyanothece sp. (strain PCC 7822) RepID=E0U611_CYAP2
Uncharacterized protein {ECO:0000313|EMBL:ETX08490.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_351_curated_18
Amphimedon queenslandica, Amphimedon, Haplosclerida, Demospongiae, Porifera, Metazoa

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comp(30676..32118)
DNA (1443bp) protein (481aa)
PREDICTED: hypothetical protein LOC100637562 n=1 Tax=Amphimedon queenslandica RepID=UPI00021A5E20
uncharacterized LOC100637562
Uncharacterized protein {ECO:0000313|EnsemblMetazoa:PAC:15703825}; TaxID=400682 species="Eukaryota; Metazoa; Porifera; Demospongiae; Haplosclerida; Niphatidae; Amphimedon.;" source="Amphimedon queenslandica (Sponge).;"
SCNpilot_expt_300_bf_scaffold_351_curated_19
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32163..32723)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCR5_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB73456.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_300_bf_scaffold_351_curated_20
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32772..33170)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJL8_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62932.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_351_curated_21
unknown

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comp(33404..33493)
DNA (90bp) protein (30aa)

This feature has no annotations

Displaying 21 items

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