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SCNpilot_expt_300_bf_scaffold_107_curated

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Displaying items 1-30 of 218 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_107_curated_1
unknown

Not on your lists

2..157
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_107_curated_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(130..999)
DNA (870bp) protein (290aa)
Regulatory protein, LuxR:Response regulator receiver n=1 Tax=Nitrosospira sp. APG3 RepID=M5DQE1_9PROT
Regulatory protein, LuxR:Response regulator receiver {ECO:0000313|EMBL:CCU61655.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
two component LuxR family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_107_curated_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1115..2272)
DNA (1158bp) protein (386aa)
Probable two-component sensor, near polyamine transporter n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF97_9PROT
Histidine kinase {ECO:0000313|EMBL:KIO49094.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
histidine kinase, dimerisation and phosphoacceptor region
SCNpilot_expt_300_bf_scaffold_107_curated_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2444..2749
DNA (306bp) protein (102aa)
vanillate O-demethylase oxidoreductase VanB n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174562B
Vanillate O-demethylase oxidoreductase VanB {ECO:0000313|EMBL:KIO50006.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_107_curated_5
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2736..3080
DNA (345bp) protein (115aa)
Transcriptional regulator, ArsR family n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7Q4D5_METSZ
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:BAQ18806.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
ArsR family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_107_curated_6
unknown

Not on your lists

3032..3220
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_107_curated_7
Pseudomonas sp. FGI182, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3530..6202)
DNA (2673bp) protein (891aa)
Uncharacterized protein n=1 Tax=Arthrospira platensis C1 RepID=K1W8J6_ARTPT
Uncharacterized protein {ECO:0000313|EMBL:AHD12781.1}; TaxID=1259844 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FGI182.;"
chromosome partitioning ATPase
SCNpilot_expt_300_bf_scaffold_107_curated_8
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6199..6654)
DNA (456bp) protein (152aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BRE5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EDN70890.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
SCNpilot_expt_300_bf_scaffold_107_curated_9
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7011..7619)
DNA (609bp) protein (203aa)
Methyltransferase type 12 n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EMS6_METSB
type 12 methyltransferase
Methyltransferase type 12 {ECO:0000313|EMBL:ACK52755.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_300_bf_scaffold_107_curated_10
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7635..7946)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9CWF0_9RHIZ
Plasmid stabilization system protein {ECO:0000313|EMBL:EDQ35510.1}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
plasmid stabilization system
SCNpilot_expt_300_bf_scaffold_107_curated_11
unknown

Not on your lists

comp(7915..8094)
DNA (180bp) protein (60aa)
hypothetical protein n=1 Tax=Methylocystis parvus RepID=UPI000364A70A
SCNpilot_expt_300_bf_scaffold_107_curated_12
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8456..8785)
DNA (330bp) protein (110aa)
Putative transcriptional regulator n=1 Tax=Azoarcus sp. KH32C RepID=H0PZW3_9RHOO
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:BAL25601.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
SCNpilot_expt_300_bf_scaffold_107_curated_13
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8782..9105)
DNA (324bp) protein (108aa)
addiction module killer protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00037B335A
Addiction module killer protein {ECO:0000313|EMBL:BAP88177.1}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_107_curated_14

Not on your lists

comp(9401..9847)
DNA (447bp) protein (149aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
recombinase n=1 Tax=Rhizobium leguminosarum RepID=UPI000360F729
stbB; Plasmid stability protein StbB, putative; K07062
SCNpilot_expt_300_bf_scaffold_107_curated_15
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9847..10146)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N7J3_RHOPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF83819.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
SCNpilot_expt_300_bf_scaffold_107_curated_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10297..11232)
DNA (936bp) protein (312aa)
Flagellar hook-associated protein FlgL n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGW0_9PROT
Flagellar hook protein FlgL {ECO:0000313|EMBL:KIO49095.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
flgL; flagellar hook-associated protein FlgL; K02397 flagellar hook-associated protein 3 FlgL
SCNpilot_expt_300_bf_scaffold_107_curated_17
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11308..13218)
DNA (1911bp) protein (637aa)
Flagellar hook-associated protein FlgK n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH76_9PROT
Flagellar hook-associated protein FlgK {ECO:0000313|EMBL:CCU61658.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
flgK; flagellar hook-associated protein FlgK; K02396 flagellar hook-associated protein 1 FlgK
SCNpilot_expt_300_bf_scaffold_107_curated_18
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13381..14346)
DNA (966bp) protein (322aa)
Flagellar protein FlgJ [peptidoglycan hydrolase] n=1 Tax=Nitrosospira sp. APG3 RepID=M5DQE7_9PROT
Flagellar protein FlgJ [peptidoglycan hydrolase] {ECO:0000313|EMBL:CCU61660.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; K02395 flagellar protein FlgJ
SCNpilot_expt_300_bf_scaffold_107_curated_19
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14346..15494)
DNA (1149bp) protein (383aa)
Flagellar P-ring protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF98_9PROT
Flagellar P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Basal body P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Flags: Precursor;; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
flgI; flagellar basal body P-ring protein; K02394 flagellar P-ring protein precursor FlgI
SCNpilot_expt_300_bf_scaffold_107_curated_20
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15504..16265)
DNA (762bp) protein (254aa)
Flagellar L-ring protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGW5_9PROT
Flagellar L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; Basal body L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
flgH; flagellar basal body L-ring protein; K02393 flagellar L-ring protein precursor FlgH
SCNpilot_expt_300_bf_scaffold_107_curated_21
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16310..17092)
DNA (783bp) protein (261aa)
Flagellar basal-body rod protein FlgG n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH80_9PROT
Flagellar basal-body rod protein FlgG {ECO:0000313|EMBL:CCU61663.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein; K02392 flagellar basal-body rod protein FlgG
SCNpilot_expt_300_bf_scaffold_107_curated_22
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17442..18194)
DNA (753bp) protein (251aa)
Flagellar basal-body rod protein FlgF n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGQ9_9PROT
Flagellar basal-body rod protein FlgF {ECO:0000313|EMBL:CCU61664.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
flgF; flagellar basal body rod protein FlgF; K02391 flagellar basal-body rod protein FlgF
SCNpilot_expt_300_bf_scaffold_107_curated_23
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18302..19522)
DNA (1221bp) protein (407aa)
Flagellar hook protein FlgE n=1 Tax=Nitrosospira sp. APG3 RepID=M5DQF3_9PROT
Flagellar hook protein FlgE {ECO:0000313|EMBL:CCU61665.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
flgE; flagellar hook protein FlgE; K02390 flagellar hook protein FlgE
SCNpilot_expt_300_bf_scaffold_107_curated_24
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19607..20275)
DNA (669bp) protein (223aa)
Flagellar basal-body rod modification protein FlgD n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF99_9PROT
Flagellar basal body rod modification protein FlgD {ECO:0000313|EMBL:KIO49102.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
flgD; flagellar basal body rod modification protein; K02389 flagellar basal-body rod modification protein FlgD
SCNpilot_expt_300_bf_scaffold_107_curated_25
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20287..20742)
DNA (456bp) protein (152aa)
Flagellar basal-body rod protein FlgC n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9E6_NITMU
flagellar basal-body rod protein FlgC; K02388 flagellar basal-body rod protein FlgC
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_300_bf_scaffold_107_curated_26
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20757..21155)
DNA (399bp) protein (133aa)
Flagellar basal body rod protein FlgB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH84_9PROT
Flagellar basal body rod protein FlgB {ECO:0000256|PIRNR:PIRNR002889}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
flagellar basal-body rod protein FlgB; K02387 flagellar basal-body rod protein FlgB
SCNpilot_expt_300_bf_scaffold_107_curated_27
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21509..22240
DNA (732bp) protein (244aa)
Flagellar basal-body P-ring formation protein FlgA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DQF9_9PROT
Flagella basal body P-ring formation protein FlgA {ECO:0000256|RuleBase:RU362063}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
flageller protein FlgA; K02386 flagella basal body P-ring formation protein FlgA
SCNpilot_expt_300_bf_scaffold_107_curated_28
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22503..22811
DNA (309bp) protein (103aa)
Anti-sigma-28 factor, FlgM n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFA0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO49106.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
anti-sigma-28 factor FlgM; K02398 negative regulator of flagellin synthesis FlgM
SCNpilot_expt_300_bf_scaffold_107_curated_29
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22826..23293
DNA (468bp) protein (156aa)
FlgN n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGX2_9PROT
Flagellar biosynthesis protein FlgN {ECO:0000313|EMBL:KIO49217.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
FlgN; K02399 flagella synthesis protein FlgN
SCNpilot_expt_300_bf_scaffold_107_curated_30
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23714..24613)
DNA (900bp) protein (300aa)
Flagellar motor rotation protein MotB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH88_9PROT
Flagellar motor protein MotD {ECO:0000313|EMBL:KIO49218.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
flagellar motor protein MotD; K02557 chemotaxis protein MotB
Displaying items 1-30 of 218 in total

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