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SCNpilot_expt_300_bf_scaffold_531_curated

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_531_curated_1
unknown

Not on your lists

434..601
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_531_curated_2
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

591..1037
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G7B3_HERAR
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
SCNpilot_expt_300_bf_scaffold_531_curated_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1003..1818)
DNA (816bp) protein (272aa)
[sulfur carrier protein ThiS] adenylyltransferase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YA00_NITMU
Molybdopterin biosynthesis protein MoeB {ECO:0000313|EMBL:KIO48954.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
UBA/THIF-type NAD/FAD binding domain-containing protein
SCNpilot_expt_300_bf_scaffold_531_curated_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1907..3355)
DNA (1449bp) protein (483aa)
Carboxyl-terminal protease {ECO:0000313|EMBL:CCU63125.1}; EC=3.4.21.102 {ECO:0000313|EMBL:CCU63125.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
carboxyl-terminal protease (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102]
Carboxyl-terminal protease n=1 Tax=Nitrosospira sp. APG3 RepID=M5DUT4_9PROT
SCNpilot_expt_300_bf_scaffold_531_curated_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3391..4692)
DNA (1302bp) protein (434aa)
Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIF1_9PROT
Peptidase M23 {ECO:0000313|EMBL:KIO48993.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
peptidase M23B
SCNpilot_expt_300_bf_scaffold_531_curated_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4838..5587)
DNA (750bp) protein (250aa)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01039};; Short=dPGM {ECO:0000256|HAMAP-Rule:MF_01039};; EC=5.4.2.11 {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitros
gpmA; phosphoglyceromutase (EC:5.4.2.1); K01834 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.1]
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK17_9PROT
SCNpilot_expt_300_bf_scaffold_531_curated_7
unknown

Not on your lists

5620..5892
DNA (273bp) protein (91aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_531_curated_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5894..6316
DNA (423bp) protein (141aa)
FIG136845: Rhodanese-related sulfurtransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJY6_9PROT
Membrane protein {ECO:0000313|EMBL:KIO48951.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
rhodanese-like protein
SCNpilot_expt_300_bf_scaffold_531_curated_9
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6325..6579
DNA (255bp) protein (85aa)
Glutaredoxin, GrxC n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9Z5_NITMU
glutaredoxin GrxC; K03676 glutaredoxin 3
Glutaredoxin, GrxC {ECO:0000313|EMBL:ABB74426.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_300_bf_scaffold_531_curated_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6816..7298
DNA (483bp) protein (161aa)
Protein-export protein SecB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIF7_9PROT
Protein-export protein SecB {ECO:0000256|HAMAP-Rule:MF_00821}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
preprotein translocase subunit SecB; K03071 preprotein translocase subunit SecB
SCNpilot_expt_300_bf_scaffold_531_curated_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7311..7808
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK22_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO48949.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_531_curated_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7805..8806
DNA (1002bp) protein (334aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94); K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKM9_9PROT
SCNpilot_expt_300_bf_scaffold_531_curated_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8857..9321)
DNA (465bp) protein (155aa)
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
yibK; RNA methyltransferase TrmH, group 2 (EC:2.1.1.-); K03216 tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJZ1_9PROT
SCNpilot_expt_300_bf_scaffold_531_curated_14
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9439..9846)
DNA (408bp) protein (136aa)
Competence protein F homolog,phosphoribosyltransferase domain protein YhgH required for utilization of DNA as sole source of carbon and energy n=1 Tax=Nitrosospira sp. APG3 RepID=M5DUU6_9PROT
Competence protein F homolog,phosphoribosyltransferase domain protein YhgH required for utilization of DNA as sole source of carbon and energy {ECO:0000313|EMBL:CCU63135.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
phosphoribosyltransferase
SCNpilot_expt_300_bf_scaffold_531_curated_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10361..11350
DNA (990bp) protein (330aa)
Biotin synthase {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00009987}; EC=2.8.1.6 {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00250466};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
biotin synthase (EC:2.8.1.6); K01012 biotin synthetase [EC:2.8.1.6]
Biotin synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIG2_9PROT
SCNpilot_expt_300_bf_scaffold_531_curated_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11450..12619
DNA (1170bp) protein (390aa)
8-amino-7-oxononanoate synthase {ECO:0000256|HAMAP-Rule:MF_01693, ECO:0000256|SAAS:SAAS00087543}; Short=AONS {ECO:0000256|HAMAP-Rule:MF_01693};; EC=2.3.1.47 {ECO:0000256|HAMAP-Rule:MF_01693, ECO:0000256|SAAS:SAAS00087543};; 7-keto-8-amino-pelargonic acid synthase {ECO:0000256|HAMAP-Rule:MF_01693}; 8-amino-7-ketopelargonate synthase {ECO:0000256|HAMAP-Rule:MF_01693}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp
8-amino-7-oxononanoate synthase (EC:2.3.1.47); K00652 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
8-amino-7-oxononanoate synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK26_9PROT
SCNpilot_expt_300_bf_scaffold_531_curated_17
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12629..13420
DNA (792bp) protein (264aa)
Pimeloyl-[acyl-carrier protein] methyl ester esterase {ECO:0000256|HAMAP-Rule:MF_01260, ECO:0000256|SAAS:SAAS00064125}; EC=3.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01260, ECO:0000256|SAAS:SAAS00064111};; Biotin synthesis protein BioH {ECO:0000256|HAMAP-Rule:MF_01260}; Carboxylesterase BioH {ECO:0000256|HAMAP-Rule:MF_01260}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Carboxylesterase bioH; K02170 pimelyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
Pimelyl-[acyl-carrier protein] methyl ester esterase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKN5_9PROT
SCNpilot_expt_300_bf_scaffold_531_curated_18
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13432..14295
DNA (864bp) protein (288aa)
Malonyl-[acyl-carrier protein] O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00835, ECO:0000256|SAAS:SAAS00055581}; Short=Malonyl-ACP O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00835};; EC=2.1.1.197 {ECO:0000256|HAMAP-Rule:MF_00835, ECO:0000256|SAAS:SAAS00055581};; Biotin synthesis protein BioC {ECO:0000256|HAMAP-Rule:MF_00835}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
biotin biosynthesis protein BioC; K02169 malonyl-CoA O-methyltransferase [EC:2.1.1.197]
Malonyl-[acyl-carrier protein] O-methyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJZ5_9PROT
SCNpilot_expt_300_bf_scaffold_531_curated_19
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14301..14990
DNA (690bp) protein (230aa)
ATP-dependent dethiobiotin synthetase BioD {ECO:0000256|HAMAP-Rule:MF_00336}; EC=6.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00336, ECO:0000256|SAAS:SAAS00089806};; DTB synthetase {ECO:0000256|HAMAP-Rule:MF_00336}; Dethiobiotin synthase {ECO:0000256|HAMAP-Rule:MF_00336}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
bioD; dithiobiotin synthetase (EC:6.3.3.3); K01935 dethiobiotin synthetase [EC:6.3.3.3]
ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=BIOD_NITMU
SCNpilot_expt_300_bf_scaffold_531_curated_20
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15044..15433)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIG7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU63141.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
membrane protein; K08972 putative membrane protein
SCNpilot_expt_300_bf_scaffold_531_curated_21
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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16121..17101
DNA (981bp) protein (327aa)
Response regulator receiver modulated diguanylate cyclase id=1905927 bin=GWD2_Desulfuromonadales_54_10 species=Nitrosospira multiformis genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
diguanylate cyclase
Tax=GWD2_Desulfuromonadales_54_10_curated
SCNpilot_expt_300_bf_scaffold_531_curated_22
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17563..19650
DNA (2088bp) protein (696aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKN8_9PROT
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:CCU63143.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
response regulator receiver/GGDEF/PAS/PAC domain-containing protein
SCNpilot_expt_300_bf_scaffold_531_curated_23
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19806..20579
DNA (774bp) protein (258aa)
Beta-lactamase-like protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9X9_NITMU
beta-lactamase-like protein
Beta-lactamase-like protein {ECO:0000313|EMBL:ABB74442.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_300_bf_scaffold_531_curated_24
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20670..20876)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DUV9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU63145.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_expt_300_bf_scaffold_531_curated_25
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21078..21359)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIH2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU63146.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_531_curated_26
unknown

Not on your lists

21492..21674
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_531_curated_27
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21913..22137)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9X6_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB74445.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_300_bf_scaffold_531_curated_28
unknown

Not on your lists

22273..22446
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_531_curated_29
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22405..23520)
DNA (1116bp) protein (372aa)
Putative cytoplasmic protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DUW5_9PROT
Putative cytoplasmic protein {ECO:0000313|EMBL:CCU63150.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_531_curated_30
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23951..25831)
DNA (1881bp) protein (627aa)
DNA mismatch repair protein MutL n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9X4_NITMU
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
DNA mismatch repair protein MutL; K03572 DNA mismatch repair protein MutL
Displaying items 1-30 of 53 in total

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