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SCNpilot_expt_300_bf_scaffold_778_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_778_curated_1
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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2..100
DNA (99bp) protein (33aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YAH6_NITMU
hypothetical protein; K09967 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB74245.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_300_bf_scaffold_778_curated_2
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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243..2582
DNA (2340bp) protein (780aa)
Biotin / Lipoyl attachment:DUF183:DUF213 n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82SC7_NITEU
biotin / lipoyl attachment protein rbh
Biotin / Lipoyl attachment:DUF183:DUF213 {ECO:0000313|EMBL:CAD86328.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
SCNpilot_expt_300_bf_scaffold_778_curated_3
unknown

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2587..2721
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_778_curated_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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2771..3823
DNA (1053bp) protein (351aa)
Biotin synthase {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00009987}; EC=2.8.1.6 {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00250466};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
biotin synthase (EC:2.8.1.6); K01012 biotin synthetase [EC:2.8.1.6]
Biotin synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIG2_9PROT
SCNpilot_expt_300_bf_scaffold_778_curated_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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3865..5073
DNA (1209bp) protein (403aa)
8-amino-7-oxononanoate synthase {ECO:0000256|HAMAP-Rule:MF_01693, ECO:0000256|SAAS:SAAS00087543}; Short=AONS {ECO:0000256|HAMAP-Rule:MF_01693};; EC=2.3.1.47 {ECO:0000256|HAMAP-Rule:MF_01693, ECO:0000256|SAAS:SAAS00087543};; 7-keto-8-amino-pelargonic acid synthase {ECO:0000256|HAMAP-Rule:MF_01693}; 8-amino-7-ketopelargonate synthase {ECO:0000256|HAMAP-Rule:MF_01693}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira
8-amino-7-oxononanoate synthase (EC:2.3.1.47); K00652 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
8-amino-7-oxononanoate synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK26_9PROT
SCNpilot_expt_300_bf_scaffold_778_curated_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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5086..5997
DNA (912bp) protein (304aa)
Malonyl-[acyl-carrier protein] O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00835, ECO:0000256|SAAS:SAAS00055581}; Short=Malonyl-ACP O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00835};; EC=2.1.1.197 {ECO:0000256|HAMAP-Rule:MF_00835, ECO:0000256|SAAS:SAAS00055581};; Biotin synthesis protein BioC {ECO:0000256|HAMAP-Rule:MF_00835}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
biotin biosynthesis protein BioC; K02169 malonyl-CoA O-methyltransferase [EC:2.1.1.197]
Malonyl-[acyl-carrier protein] O-methyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJZ5_9PROT
SCNpilot_expt_300_bf_scaffold_778_curated_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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6233..9883
DNA (3651bp) protein (1217aa)
allophanate hydrolase subunit 2; K01941 urea carboxylase [EC:6.3.4.6]
Urea carboxylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DID0_9PROT
Urea carboxylase {ECO:0000313|EMBL:KIO49081.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_300_bf_scaffold_778_curated_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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9880..11202
DNA (1323bp) protein (441aa)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000313|EMBL:CCU63608.1}; EC=2.6.1.62 {ECO:0000313|EMBL:CCU63608.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
adenosylmethionine-8-amino-7-oxononanoate aminotransferase; K00833 adenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLQ1_9PROT
SCNpilot_expt_300_bf_scaffold_778_curated_9
unknown

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11632..11763
DNA (132bp) protein (44aa)

This feature has no annotations

Displaying 9 items

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