ggKbase home page

SCNpilot_expt_300_bf_scaffold_383_curated

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_383_curated_1
unknown

Not on your lists

comp(3..98)
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_383_curated_2
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(766..1872)
DNA (1107bp) protein (369aa)
Membrane-bound metal-dependent hydrolase n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NK63_9DELT
membrane-bound metal-dependent hydrolase; K09151 hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
SCNpilot_expt_300_bf_scaffold_383_curated_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2098..2718)
DNA (621bp) protein (207aa)
Transcriptional regulator, TetR family n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y845_NITMU
TetR family transcriptional regulator {ECO:0000313|EMBL:KIO49755.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
TetR family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_383_curated_4
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(2984..4516)
DNA (1533bp) protein (511aa)
Type I phosphodiesterase/nucleotide pyrophosphatase n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QFA3_9CYAN
type I phosphodiesterase/nucleotide pyrophosphatase
Type I phosphodiesterase/nucleotide pyrophosphatase {ECO:0000313|EMBL:AGY57621.1}; TaxID=1183438 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
SCNpilot_expt_300_bf_scaffold_383_curated_5
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4698..5369
DNA (672bp) protein (224aa)
Two component heavy metal response transcriptional regulator n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8TAD3_9GAMM
Two component heavy metal response transcriptional regulator {ECO:0000313|EMBL:EIT70863.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
two component heavy metal response transcriptional regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
SCNpilot_expt_300_bf_scaffold_383_curated_6
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5356..6786
DNA (1431bp) protein (477aa)
heavy metal sensor signal transduction histidine kinase (EC:2.7.3.-); K07644 two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
Sensor histidine kinase, HAMP domain-containing n=1 Tax=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) RepID=Q39YA4_GEOMG
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
SCNpilot_expt_300_bf_scaffold_383_curated_7
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7111..8019
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00035ECF53
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
SCNpilot_expt_300_bf_scaffold_383_curated_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8106..9407
DNA (1302bp) protein (434aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DX54_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU63805.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_383_curated_9
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9575..10975
DNA (1401bp) protein (467aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YC04_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB73717.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_300_bf_scaffold_383_curated_10
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11144..11398)
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI000376EB02
IS4 family transposase
Tax=RBG_16_Deltaproteobacteria_47_11_curated
SCNpilot_expt_300_bf_scaffold_383_curated_11
Nitrosomonas sp. AL212, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11816..12142)
DNA (327bp) protein (109aa)
Addiction module antidote protein n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZK88_9PROT
addiction module antidote protein
Addiction module antidote protein {ECO:0000313|EMBL:ADZ25295.1}; TaxID=153948 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. AL212.;"
SCNpilot_expt_300_bf_scaffold_383_curated_12
Nitrosomonas sp. AL212, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12106..12471)
DNA (366bp) protein (122aa)
Addiction module killer protein n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZK87_9PROT
addiction module killer protein
Addiction module killer protein {ECO:0000313|EMBL:ADZ25294.1}; TaxID=153948 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. AL212.;"
SCNpilot_expt_300_bf_scaffold_383_curated_13
Burkholderia phymatum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12672..13091)
DNA (420bp) protein (140aa)
Transposase IS4 family protein n=1 Tax=Burkholderia phymatum (strain DSM 17167 / STM815) RepID=B2JW63_BURP8
transposase IS4 family protein
Transposase IS4 family protein {ECO:0000313|EMBL:ACC75190.1}; TaxID=391038 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phymatum (strain DSM 17167 / STM815).;"
SCNpilot_expt_300_bf_scaffold_383_curated_14
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13061..13474)
DNA (414bp) protein (138aa)
transposase n=1 Tax=Variovorax paradoxus RepID=UPI00036C0DDA
transposase
Transposase {ECO:0000313|EMBL:AFU46721.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_300_bf_scaffold_383_curated_15
unknown

Not on your lists

13876..14010
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_383_curated_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14157..14399
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82XK3_NITEU
Antitoxin {ECO:0000313|EMBL:KIO48298.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein; K07746 hypothetical protein
SCNpilot_expt_300_bf_scaffold_383_curated_17
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14400..14690
DNA (291bp) protein (97aa)
Putative plasmid stabilization element ParE n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82XK4_NITEU
Plasmid stabilization protein ParE {ECO:0000313|EMBL:KIO48297.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
plasmid stabilization element ParE
SCNpilot_expt_300_bf_scaffold_383_curated_18
R_Proteobacteria_53_8, Proteobacteria, Bacteria

Not on your lists

15066..16301
DNA (1236bp) protein (412aa)
hypothetical protein n=1 Tax=alpha proteobacterium L41A RepID=UPI000362366B
phage integrase
Tax=RIFCSPLOWO2_02_FULL_Proteobacteria_53_8_curated
SCNpilot_expt_300_bf_scaffold_383_curated_19
Paraglaciecola polaris, Paraglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16395..17162
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Glaciecola polaris LMG 21857 RepID=K6ZVU2_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:GAC32908.1}; TaxID=1129793 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Paraglaciecola.;" source="Paraglaciecola polaris LMG 21857.;"
SCNpilot_expt_300_bf_scaffold_383_curated_20
Gallionella capsiferriformans, Gallionella, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17301..17522
DNA (222bp) protein (74aa)
Prophage CP4-57 regulatory n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SHV3_GALCS
prophage CP4-57 regulatory
Prophage CP4-57 regulatory {ECO:0000313|EMBL:ADL56043.1}; TaxID=395494 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Gallionella.;" source="Gallionella capsiferriformans (strain ES-2) (Gallionella ferruginea; capsiferriformans (strain ES-2)).;"
SCNpilot_expt_300_bf_scaffold_383_curated_21
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17536..19812
DNA (2277bp) protein (759aa)
Virulence-associated E family protein n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7T9G2_ALCXX
Virulence-associated E family protein {ECO:0000313|EMBL:EGP43122.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
virulence-associated E family protein
SCNpilot_expt_300_bf_scaffold_383_curated_22
unknown

Not on your lists

19908..20078
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_383_curated_23
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20116..20526
DNA (411bp) protein (137aa)
Phage terminase small subunit n=1 Tax=Bordetella parapertussis (strain Bpp5) RepID=K0MCC6_BORPB
phage terminase small subunit
Phage terminase small subunit {ECO:0000313|EMBL:CCJ48959.1}; TaxID=1208660 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain Bpp5).;"
SCNpilot_expt_300_bf_scaffold_383_curated_24
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20878..21678)
DNA (801bp) protein (267aa)
integrase n=1 Tax=Pseudomonas pelagia RepID=UPI0003A4FE73
Transposase {ECO:0000313|EMBL:AKH21145.1}; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
integrase catalytic subunit; K07497 putative transposase
SCNpilot_expt_300_bf_scaffold_383_curated_25
Xenorhabdus nematophila, Xenorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21702..21965)
DNA (264bp) protein (88aa)
Low calcium response locus protein S n=1 Tax=Xenorhabdus nematophila F1 RepID=N1NN38_XENNE
Low calcium response locus protein S {ECO:0000313|EMBL:CCW30108.1}; TaxID=1306162 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Xenorhabdus.;" source="Xenorhabdus nematophila F1.;"
Low calcium response locus protein S; K07497 putative transposase
SCNpilot_expt_300_bf_scaffold_383_curated_26
Leptolyngbya sp. Heron Island J, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(22699..23511)
DNA (813bp) protein (271aa)
Type 11 methyltransferase n=1 Tax=Leptolyngbya sp. Heron Island J RepID=U9W4Q5_9CYAN
Type 11 methyltransferase {ECO:0000313|EMBL:ESA35046.1}; TaxID=1385935 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. Heron Island J.;"
type 11 methyltransferase
SCNpilot_expt_300_bf_scaffold_383_curated_27
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23626..24750)
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI00036C0905
Uncharacterized protein {ECO:0000313|EMBL:EWM11742.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_383_curated_28
Halomonas sp. KO116, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24762..25781)
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=Thiothrix disciformis RepID=UPI000362A18C
Chondroitin 4-O-sulfotransferase {ECO:0000313|EMBL:AJY51404.1}; TaxID=1504981 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. KO116.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_383_curated_29
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25843..29886)
DNA (4044bp) protein (1348aa)
Glycosyl transferase family 2 n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L0V1_HALNC
family 2 glycosyl transferase
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
SCNpilot_expt_300_bf_scaffold_383_curated_30
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29965..30672)
DNA (708bp) protein (236aa)
sugar transporter n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI00037ADD8E
kpsD; polysialic acid transport protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
Displaying items 1-30 of 52 in total

View Taxonomy