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SCNpilot_expt_300_bf_scaffold_256_curated_12

Organism: scnpilot_dereplicated_Nitrosospira_1

near complete RP 52 / 55 BSCG 51 / 51 ASCG 12 / 38
Location: comp(10906..11754)

Top 3 Functional Annotations

Value Algorithm Source
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 74.1
  • Coverage: 266.0
  • Bit_score: 420
  • Evalue 2.00e-114
tRNA pseudouridine synthase A (EC:4.2.1.70); K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12] similarity KEGG
DB: KEGG
  • Identity: 68.2
  • Coverage: 280.0
  • Bit_score: 404
  • Evalue 3.40e-110
tRNA pseudouridine synthase A n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJA4_9PROT similarity UNIREF
DB: UNIREF100
  • Identity: 74.1
  • Coverage: 266.0
  • Bit_score: 420
  • Evalue 1.50e-114

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Taxonomy

Nitrosospira lacus → Nitrosospira → Nitrosomonadales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 849
GTGAGGATCGCACTGGTTCTCGAGTACGATGGAAGCAATTTTTGCGGATGGCAGAGCCAGCCGTCCGGTGGCTCGGTGCAGGACGCGGTGGAGACTGCATTATCGAGGATCGCCGGCAATGCTACCAGAGTGCTGACGGCGGGGCGCACCGATGCTGGCGTGCATGCCGTATTCCAGGTGGTGCATTTCGACACCGAAGCGAAGCGGCCCATGAATGCGTGGATACGGGGAGTCAATGCATTTCTGCCGGACAGTATTGCGGTATTATGGGCCTTGCCAATGCCGCCCGATTTTCATGCACGCTACTGCGCCACTGAGCGCTGCTACCTGTACCTGTTGCTCGCCCATCCGGTACGGCCGGCACTCAACCAGGGCAAGATGGGCTGGTTTCATCAATCGCTCGATCTCGAATCCATGCGTTCCGCGGCCGGGTTTCTGCTGGGGGAGCATGACTTCAGCGCGTTTCGTGCCGCTGAATGCCAGGCGAAGTCGCCCGTGCGCAAGCTGACGAAGCTGGAAATCACCCGGCATGGCGATATCATTGTGTTTGAAGTACGCGCCAACGCTTTTTTGCATCATATGGTACGCAATATTGTCGGTTCGCTGGTTTACGTGGGGAAGGGCAAATATCCCCCGGCATGGATGGCGGAAGTGCTGGCCCGGCGGAGGCGTGAACTTGCCGCTCCCACTTTTCCGGCAGCCGGCCTGTATCTGGCGGGCATCGGCTATGATGCCAGATGGCAGGTTCCGGAATTCATCGAACCGCCACTGGCGGCGGTACTGCAAAAGTCGAACAGGTCATTGCCTACAAGCTCCCGGGAGCCAAGCCTGCCCGGCGGCATCGGGTGA
PROTEIN sequence
Length: 283
VRIALVLEYDGSNFCGWQSQPSGGSVQDAVETALSRIAGNATRVLTAGRTDAGVHAVFQVVHFDTEAKRPMNAWIRGVNAFLPDSIAVLWALPMPPDFHARYCATERCYLYLLLAHPVRPALNQGKMGWFHQSLDLESMRSAAGFLLGEHDFSAFRAAECQAKSPVRKLTKLEITRHGDIIVFEVRANAFLHHMVRNIVGSLVYVGKGKYPPAWMAEVLARRRRELAAPTFPAAGLYLAGIGYDARWQVPEFIEPPLAAVLQKSNRSLPTSSREPSLPGGIG*