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SCNpilot_expt_300_bf_scaffold_564_curated_27

Organism: scnpilot_dereplicated_Nitrosospira_1

near complete RP 52 / 55 BSCG 51 / 51 ASCG 12 / 38
Location: 13172..14176

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.8
  • Coverage: 333.0
  • Bit_score: 632
  • Evalue 4.00e-178
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 92.8
  • Coverage: 333.0
  • Bit_score: 615
  • Evalue 1.10e-173
DNA-directed RNA polymerase subunit alpha n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLV5_9PROT similarity UNIREF
DB: UNIREF100
  • Identity: 95.8
  • Coverage: 333.0
  • Bit_score: 632
  • Evalue 2.90e-178

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Taxonomy

Nitrosospira lacus → Nitrosospira → Nitrosomonadales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1005
ATGCCAAGTAACACTTTTCTTACGCCGCGCATTATTGACGTTCAGAATGTTTCTCCATTGCATGCGAAAATTACAATGGAGCCATTCGAACGTGGTTATGGGCATACGTTGGGAAATGCATTGCGCCGTATTCTTCTTTCTTCGATGCCGGGATTTGCGCCAACCGAGGTTCAAATCAGCGGGGTGGTGCATGAGTACTCTGCCCTGGACGGCGTGCAGGAGGATGTGGTCGATATCCTGCTGAACTTGAAGGGTATCGTTTTAAAGTTGCATAACAGGAGCGAAGCCGTACTGGTTCTCAAGAAGAAAGGCGAGGGTACGGTTACAGCCGGCGATATCGAAGCCTCGCACGATGTGGAAATCATTAATCCCGACCACGTCATTGCGCATCTTACCGCGGGTGGAAAGCTTGATATGCAAATAAAGGTGGAGCTGGGCCGGGGCTATGTACCCGGGACTGTTCGCCAGCCAGGAAACGAAGGCCGCACCATCGGCAGTATTCTGCTCGATGCGTCCTTTAGCCCGGTGCGGCGCGTGAGTTATGCGGTGGAAAGCGCGCGCGTGGAGCAACGCACCGATCTGGATAAGCTTGTGATGGATATTGAAACCAACGGTGTTGTGGATCCGGAAGAGGCAATCCGGTACGCGGCAAAAGTCCTTGTGGAGCAACTCTCCGTATTTGCCGACCTCAAGGGCACGCCAATGCCTGTGGAGCAGCCTAAGCTGCCTCAGGTGGACCCGGTCCTTCTTCGGCCTGTCGATGATCTCGAGCTTACCGTTCGTTCGGCCAATTGCCTCAAGGCCGAAAACATCTATTATATCGGCGACCTGATCCAGCGTACTGAGACCGAGCTACTGAAAACCCCCAATCTGGGGAGAAAGTCGTTGAACGAAATCAAGGAGGTATTGGCCTCTCGCGGATTGACGCTCGGTATGAAGCTCGAAAGTTGGCCTCCAGCCAATCTTGATAAAAGTAAAAAGGAAGCAAGCCATGCGTCATCATAA
PROTEIN sequence
Length: 335
MPSNTFLTPRIIDVQNVSPLHAKITMEPFERGYGHTLGNALRRILLSSMPGFAPTEVQISGVVHEYSALDGVQEDVVDILLNLKGIVLKLHNRSEAVLVLKKKGEGTVTAGDIEASHDVEIINPDHVIAHLTAGGKLDMQIKVELGRGYVPGTVRQPGNEGRTIGSILLDASFSPVRRVSYAVESARVEQRTDLDKLVMDIETNGVVDPEEAIRYAAKVLVEQLSVFADLKGTPMPVEQPKLPQVDPVLLRPVDDLELTVRSANCLKAENIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASRGLTLGMKLESWPPANLDKSKKEASHASS*