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SCNpilot_cont_300_bf_scaffold_97_curated

Search features with annotation key words

Displaying items 1-30 of 176 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_97_curated_1
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58..933)
DNA (876bp) protein (292aa)
antirepressor n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037CDC0D
Antirestriction protein ArdC {ECO:0000313|EMBL:AJA11375.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
ardC; antirestriction protein ArdC
SCNpilot_cont_300_bf_scaffold_97_curated_2
unknown

Not on your lists

1443..2318
DNA (876bp) protein (292aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_97_curated_3
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2331..3119)
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DGS9_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL13473.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_cont_300_bf_scaffold_97_curated_4
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3223..4986)
DNA (1764bp) protein (588aa)
UPI0003D68E96 related cluster n=1 Tax=unknown RepID=UPI0003D68E96
Chemotaxis protein {ECO:0000313|EMBL:ETI64275.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_97_curated_5
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4983..6677)
DNA (1695bp) protein (565aa)
UPI0003D5ADE1 related cluster n=1 Tax=unknown RepID=UPI0003D5ADE1
Uncharacterized protein {ECO:0000313|EMBL:ETI64311.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_97_curated_6
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7278..9032
DNA (1755bp) protein (585aa)
UPI0003CEFE0B related cluster n=1 Tax=unknown RepID=UPI0003CEFE0B
Uncharacterized protein {ECO:0000313|EMBL:KFD25689.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_97_curated_7
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9029..9658
DNA (630bp) protein (210aa)
UPI0003CEB5F9 related cluster n=1 Tax=unknown RepID=UPI0003CEB5F9
Uncharacterized protein {ECO:0000313|EMBL:KFD25690.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_cont_300_bf_scaffold_97_curated_8
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9655..12087
DNA (2433bp) protein (811aa)
UPI0003CEEB63 related cluster n=1 Tax=unknown RepID=UPI0003CEEB63
Uncharacterized protein {ECO:0000313|EMBL:KFD25691.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_97_curated_9
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12672..13001
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Alphaproteobacteria RepID=UPI000262C777
Uncharacterized protein {ECO:0000313|EMBL:KEZ12087.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_97_curated_10
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13075..14337
DNA (1263bp) protein (421aa)
transporter n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C778
Transporter {ECO:0000313|EMBL:KEZ12088.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
heavy metal efflux system protein; K15725 cobalt-zinc-cadmium resistance protein CzcC
SCNpilot_cont_300_bf_scaffold_97_curated_11
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14341..15507
DNA (1167bp) protein (389aa)
hemolysin D n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036EAE24
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:KEZ16604.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
RND family efflux transporter MFP subunit; K15727 cobalt-zinc-cadmium resistance protein CzcB
SCNpilot_cont_300_bf_scaffold_97_curated_12
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15512..18751
DNA (3240bp) protein (1080aa)
cation transporter n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C77A
Cation transporter {ECO:0000313|EMBL:KFD26961.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
CzcA family heavy metal efflux pump; K15726 cobalt-zinc-cadmium resistance protein CzcA
SCNpilot_cont_300_bf_scaffold_97_curated_13
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18822..19316
DNA (495bp) protein (165aa)
UPI0003D66734 related cluster n=1 Tax=unknown RepID=UPI0003D66734
Uncharacterized protein {ECO:0000313|EMBL:ETI58573.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
SCNpilot_cont_300_bf_scaffold_97_curated_14
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19406..20020
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000317DE79
Scaffold19, whole genome shotgun sequence {ECO:0000313|EMBL:KIS30676.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
SCNpilot_cont_300_bf_scaffold_97_curated_15
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20025..20663
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Alphaproteobacteria RepID=UPI000262C77E
Uncharacterized protein {ECO:0000313|EMBL:KFL44937.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
SCNpilot_cont_300_bf_scaffold_97_curated_16
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20660..23131
DNA (2472bp) protein (824aa)
Heavy metal translocating P-type ATPase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S7D5_9SPHN
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:AGH50424.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
heavy metal translocating P-type ATPase
SCNpilot_cont_300_bf_scaffold_97_curated_17
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23138..23821
DNA (684bp) protein (228aa)
Transporter n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EJI6_9SPHN
Transporter {ECO:0000313|EMBL:EHJ58513.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
transporter; K07238 zinc transporter, ZIP family
SCNpilot_cont_300_bf_scaffold_97_curated_18
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24003..24854
DNA (852bp) protein (284aa)
membrane protein n=1 Tax=Alphaproteobacteria RepID=UPI000262C781
Membrane protein {ECO:0000313|EMBL:KFD26954.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein; K08994 putative membrane protein
SCNpilot_cont_300_bf_scaffold_97_curated_19
unknown

Not on your lists

24854..25957
DNA (1104bp) protein (368aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_97_curated_20
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26206..26943
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002E7AF4D
LuxR family transcriptional regulator {ECO:0000313|EMBL:KEQ53292.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
LuxR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_97_curated_21
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27029..27673
DNA (645bp) protein (215aa)
Acyl-homoserine-lactone synthase {ECO:0000256|RuleBase:RU361135}; EC=2.3.1.184 {ECO:0000256|RuleBase:RU361135};; Autoinducer synthesis protein {ECO:0000256|RuleBase:RU361135}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00030E56B9
luxI; N-acyl-L-homoserine lactone synthetase
SCNpilot_cont_300_bf_scaffold_97_curated_22
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27685..28581
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002EF4096
Uncharacterized protein {ECO:0000313|EMBL:KEQ53294.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_97_curated_23
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28578..29189
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002EE891F
Uncharacterized protein {ECO:0000313|EMBL:AHE55572.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_97_curated_24
unknown

Not on your lists

29315..29455
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_97_curated_25
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29521..30195
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CMU4_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:AHE55570.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_97_curated_26
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30195..31976
DNA (1782bp) protein (594aa)
asparagine synthase (EC:6.3.5.4)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CNY3_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:AHE55569.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCNpilot_cont_300_bf_scaffold_97_curated_27
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32009..34135)
DNA (2127bp) protein (709aa)
Acylaminoacyl-peptidase n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NEQ6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE55568.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
putative peptidase
SCNpilot_cont_300_bf_scaffold_97_curated_28
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34168..36768)
DNA (2601bp) protein (867aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NEQ5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE55567.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
TonB-dependent receptor-like protein
SCNpilot_cont_300_bf_scaffold_97_curated_29
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36835..37917)
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D7T9_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:AHE55566.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
fecR; Fe2+-dicitrate sensor membrane component; K07165 transmembrane sensor
SCNpilot_cont_300_bf_scaffold_97_curated_30
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37917..38495)
DNA (579bp) protein (193aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CMT9_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:AHE55565.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Displaying items 1-30 of 176 in total

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