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SCNpilot_cont_300_bf_scaffold_78_curated

Search features with annotation key words

Displaying items 1-30 of 182 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_78_curated_1
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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165..1985
DNA (1821bp) protein (607aa)
Type I restriction-modification system methyltransferase subunit (EC:2.1.1.72)
N-6 DNA methylase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8D0_9SPHN
N-6 DNA methylase {ECO:0000313|EMBL:EGD59095.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_cont_300_bf_scaffold_78_curated_2
GWD2_Desulfuromonadales_61_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1982..3337
DNA (1356bp) protein (452aa)
restriction modification system DNA specificity domain protein; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3]
type I restriction-modification protein subunit S n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A5ECBC
Tax=GWD2_Desulfuromonadales_61_12_curated
SCNpilot_cont_300_bf_scaffold_78_curated_3
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3334..4263
DNA (930bp) protein (310aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8C8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59097.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_78_curated_4
unknown

Not on your lists

4291..5073
DNA (783bp) protein (261aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_78_curated_5
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5084..8179
DNA (3096bp) protein (1032aa)
Type I site-specific restriction-modification system, R (restriction) subunit and related helicase (EC:3.1.21.3)
Type I site-specific restriction-modification system, R subunit n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8C6_9SPHN
Type I site-specific restriction-modification system, R subunit {ECO:0000313|EMBL:EGD59099.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_cont_300_bf_scaffold_78_curated_6
RLO_Sphingomonadales_63_15, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8163..9020
DNA (858bp) protein (286aa)
Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
SCNpilot_cont_300_bf_scaffold_78_curated_7
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9108..9287
DNA (180bp) protein (60aa)
Uncharacterized protein {ECO:0000313|EMBL:AHE57322.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCNpilot_cont_300_bf_scaffold_78_curated_8
unknown

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9293..9487
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_78_curated_9
unknown

Not on your lists

9480..10067
DNA (588bp) protein (196aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_78_curated_10
RLO_Sphingomonadales_63_15, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10057..11598
DNA (1542bp) protein (514aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI00035F2985
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
SCNpilot_cont_300_bf_scaffold_78_curated_11
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11707..12339
DNA (633bp) protein (211aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EB93_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EHJ61452.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCNpilot_cont_300_bf_scaffold_78_curated_12
unknown

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comp(12650..12955)
DNA (306bp) protein (102aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_78_curated_13
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13209..15596)
DNA (2388bp) protein (796aa)
TonB-dependent receptor n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C380_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:EIZ77895.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_78_curated_14
unknown

Not on your lists

16170..16841
DNA (672bp) protein (224aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_78_curated_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16852..18741)
DNA (1890bp) protein (630aa)
Acetyl-coenzyme A synthetase {ECO:0000313|EMBL:GAO55175.1}; EC=6.2.1.1 {ECO:0000313|EMBL:GAO55175.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
AMP-dependent synthetase/ligase; K01908 propionyl-CoA synthetase [EC:6.2.1.17]
AMP-dependent synthetase and ligase n=2 Tax=Novosphingobium nitrogenifigens RepID=F1ZCN9_9SPHN
SCNpilot_cont_300_bf_scaffold_78_curated_16
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18783..19304)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWH8_9SPHN
GCN5 family acetyltransferase {ECO:0000313|EMBL:KHK92579.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
GCN5-like N-acetyltransferase
SCNpilot_cont_300_bf_scaffold_78_curated_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19425..21191)
DNA (1767bp) protein (589aa)
major facilitator transporter n=1 Tax=Sphingomonas elodea RepID=UPI000263058C
Permeases of the major facilitator superfamily {ECO:0000313|EMBL:GAO55174.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
general substrate transporter
SCNpilot_cont_300_bf_scaffold_78_curated_18
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21241..22713)
DNA (1473bp) protein (491aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WGH4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82778.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_78_curated_19
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22961..24910
DNA (1950bp) protein (650aa)
Acetyl-coenzyme A synthetase {ECO:0000255|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000255|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000255|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000255|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000255|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000255|HAMAP-Rule:MF_01123}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444
acetyl-coenzyme A synthetase (EC:6.2.1.1); K01895 acetyl-CoA synthetase [EC:6.2.1.1]
Acetyl-coenzyme A synthetase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=ACSA_NOVAD rbh
SCNpilot_cont_300_bf_scaffold_78_curated_20
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25001..25717
DNA (717bp) protein (239aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G511_NOVAD
Two component LuxR family transcriptional regulator {ECO:0000313|EMBL:KHS42691.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
two component LuxR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_78_curated_21
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25976..29398)
DNA (3423bp) protein (1141aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F196_SPHCR
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:KEQ52068.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
multi-sensor hybrid histidine kinase
SCNpilot_cont_300_bf_scaffold_78_curated_22
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29474..30550)
DNA (1077bp) protein (359aa)
Group 1 glycosyl transferase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VWN3_9SPHN
Group 1 glycosyl transferase {ECO:0000313|EMBL:EJU12453.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
group 1 glycosyl transferase
SCNpilot_cont_300_bf_scaffold_78_curated_23
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30547..31521)
DNA (975bp) protein (325aa)
Metallophosphoesterase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VI19_9SPHN
Metallophosphoesterase {ECO:0000313|EMBL:EJU12452.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
metallophosphoesterase
SCNpilot_cont_300_bf_scaffold_78_curated_24
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31616..33133)
DNA (1518bp) protein (506aa)
exopolyphosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
Putative exopolyphosphatase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y341_9SPHN
Putative exopolyphosphatase {ECO:0000313|EMBL:GAD47346.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
SCNpilot_cont_300_bf_scaffold_78_curated_25
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33145..35346)
DNA (2202bp) protein (734aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
polyphosphate kinase (EC:2.7.4.1); K00937 polyphosphate kinase [EC:2.7.4.1]
Polyphosphate kinase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IJ36_9SPHN
SCNpilot_cont_300_bf_scaffold_78_curated_26
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35444..35914)
DNA (471bp) protein (157aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00184002}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00818}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00818}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.
7-cyano-7-deazaguanine reductase; K09457 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
7-cyano-7-deazaguanine reductase n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0668
SCNpilot_cont_300_bf_scaffold_78_curated_27
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36165..37616
DNA (1452bp) protein (484aa)
Similar to uniprot|P37370 Saccharomyces cerevisiae YLR337c VRP1 n=1 Tax=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) RepID=Q6FTP1_CANGA
hypothetical protein
Basic proline-rich protein {ECO:0000313|EMBL:EWM68858.1}; TaxID=457406 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
SCNpilot_cont_300_bf_scaffold_78_curated_28
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37763..38638
DNA (876bp) protein (292aa)
3-mercaptopyruvate sulfurtransferase (EC:2.8.1.2); K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
3-mercaptopyruvate sulfurtransferase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZD98_9SPHN
3-mercaptopyruvate sulfurtransferase {ECO:0000313|EMBL:EGD57461.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_cont_300_bf_scaffold_78_curated_29
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38732..39967
DNA (1236bp) protein (412aa)
cystathionine beta-lyase (EC:4.4.1.8); K01760 cystathionine beta-lyase [EC:4.4.1.8]
Cystathionine beta-lyase {ECO:0000313|EMBL:ABD26990.1}; EC=4.4.1.8 {ECO:0000313|EMBL:ABD26990.1};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Cystathionine beta-lyase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G583_NOVAD
SCNpilot_cont_300_bf_scaffold_78_curated_30
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40223..41479)
DNA (1257bp) protein (419aa)
MFS transporter n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B45955
MFS transporter {ECO:0000313|EMBL:ETI64684.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
major facilitator superfamily protein
Displaying items 1-30 of 182 in total

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