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SCNpilot_cont_300_bf_scaffold_305_curated

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_305_curated_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1607)
DNA (1605bp) protein (535aa)
Putative methylase/helicase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VGF7_SPHWW
Uncharacterized protein {ECO:0000313|EMBL:GAO52904.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative methylase/helicase
SCNpilot_cont_300_bf_scaffold_305_curated_2
Sphingomonas sp. KA1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1756..2505)
DNA (750bp) protein (250aa)
Possible arsH protein n=1 Tax=Sphingomonas sp. KA1 RepID=Q0KJB9_9SPHN
Possible arsH protein {ECO:0000313|EMBL:BAF03423.1}; TaxID=164608 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. KA1.;"
NADPH-dependent FMN reductase
SCNpilot_cont_300_bf_scaffold_305_curated_3
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2562..3614)
DNA (1053bp) protein (351aa)
Arsenical-resistance protein ACR3 n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MJ55_9SPHN
Arsenical-resistance protein ACR3 {ECO:0000313|EMBL:CCW16799.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
arsenical-resistance protein; K03325 arsenite transporter, ACR3 family
SCNpilot_cont_300_bf_scaffold_305_curated_4
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3611..4117)
DNA (507bp) protein (169aa)
Protein tyrosine phosphatase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XEG5_NOVAD
protein tyrosine phosphatase
Protein tyrosine phosphatase {ECO:0000313|EMBL:ABP64326.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_305_curated_5
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4128..4562)
DNA (435bp) protein (145aa)
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
arsenate reductase; K00537 arsenate reductase [EC:1.20.4.1]
Putative arsenate reductase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z741_9SPHN
SCNpilot_cont_300_bf_scaffold_305_curated_6
unknown

Not on your lists

comp(4596..4949)
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_305_curated_7
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5050..5556)
DNA (507bp) protein (169aa)
ArsR family transcriptional regulator n=2 Tax=Sphingobium RepID=T0I0K8_9SPHN
protein-tyrosine phosphatase
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_cont_300_bf_scaffold_305_curated_8
Sphingomonas sp. KA1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5553..5915)
DNA (363bp) protein (121aa)
Putative transcriptional regulator, ArsR n=1 Tax=Sphingomonas sp. KA1 RepID=Q0KJB5_9SPHN
Putative transcriptional regulator, ArsR {ECO:0000313|EMBL:BAF03427.1}; TaxID=164608 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. KA1.;"
ArsR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_305_curated_9
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6373..7428
DNA (1056bp) protein (352aa)
Transporter n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MJ50_9SPHN
permease; K07089
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_cont_300_bf_scaffold_305_curated_10
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7440..7676
DNA (237bp) protein (79aa)
Redox-active disulfide protein 2 n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MMU3_9SPHN
thiol-disulfide isomerase and thioredoxins
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_cont_300_bf_scaffold_305_curated_11
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7677..8747
DNA (1071bp) protein (357aa)
Monooxygenase, putative n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MMH4_9SPHN
Monooxygenase, putative {ECO:0000313|EMBL:CCW16792.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
flavin-containing monooxygenase
SCNpilot_cont_300_bf_scaffold_305_curated_12
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8792..9082)
DNA (291bp) protein (97aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZBR6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD58008.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_305_curated_13
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9087..9734)
DNA (648bp) protein (216aa)
ParA-like protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZCS8_9SPHN
ParA-like protein {ECO:0000313|EMBL:EGD57612.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
ParA-like protein; K03496 chromosome partitioning protein
SCNpilot_cont_300_bf_scaffold_305_curated_14
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9817..11022)
DNA (1206bp) protein (402aa)
Putative uncharacterized protein n=2 Tax=Novosphingobium nitrogenifigens RepID=F1ZBR8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD58006.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_305_curated_15
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11658..13232)
DNA (1575bp) protein (525aa)
L-aspartate oxidase (EC:1.4.3.16); K00278 L-aspartate oxidase [EC:1.4.3.16]
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049, ECO:0000313|EMBL:CCA91199.1}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049, ECO:0000313|EMBL:CCA91199.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
L-aspartate oxidase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IGD3_9SPHN
SCNpilot_cont_300_bf_scaffold_305_curated_16
unknown

Not on your lists

13509..13733
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_305_curated_17
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13771..14715)
DNA (945bp) protein (315aa)
Multidrug ABC transporter ATP-binding protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HWM3_9SPHN
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:EQB17477.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
antibiotic transport system ATP-binding protein; K09687 antibiotic transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_305_curated_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14771..16024)
DNA (1254bp) protein (418aa)
glycosyl transferase family 1 n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI000370ADBC
Glycosyltransferase {ECO:0000313|EMBL:GAO57010.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glycosyltransferase
SCNpilot_cont_300_bf_scaffold_305_curated_19
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16347..16550
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6D7D8
Uncharacterized protein {ECO:0000313|EMBL:EQB17474.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_305_curated_20
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16615..18042
DNA (1428bp) protein (476aa)
Peptidase U62, modulator of DNA gyrase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5I0_9SPHN
Peptidase U62, modulator of DNA gyrase {ECO:0000313|EMBL:EGD60090.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
peptidase U62, modulator of DNA gyrase; K03568 TldD protein
SCNpilot_cont_300_bf_scaffold_305_curated_21
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18123..18578
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HHJ9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK92462.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_305_curated_22
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18728..20287)
DNA (1560bp) protein (520aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
GMP synthase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Sphingomonas sp. LH128 RepID=J8SQI9_9SPHN
SCNpilot_cont_300_bf_scaffold_305_curated_23
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20752..22932)
DNA (2181bp) protein (727aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NG20_9SPHN
Scaffold13, whole genome shotgun sequence {ECO:0000313|EMBL:KIS31211.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
TonB-dependent receptor-like protein; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_300_bf_scaffold_305_curated_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23061..24512)
DNA (1452bp) protein (484aa)
Peptidase M20 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G329_NOVAD
Peptidase M20:Peptidase dimerisation {ECO:0000313|EMBL:GAO54839.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_305_curated_25
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24629..27190
DNA (2562bp) protein (854aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
DNA gyrase subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3]
DNA gyrase subunit B n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G328_NOVAD
SCNpilot_cont_300_bf_scaffold_305_curated_26
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27183..27503
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G327_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD27746.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_305_curated_27
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27773..28423)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. AP49 RepID=J2WQG6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO55904.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_305_curated_28
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28571..29623)
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YK80_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48687.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_305_curated_29
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29616..30572)
DNA (957bp) protein (319aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
prolipoprotein diacylglyceryl transferase; K13292 phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC:2.-.-.-]
Prolipoprotein diacylglyceryl transferase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z697_9SPHN
SCNpilot_cont_300_bf_scaffold_305_curated_30
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30735..33488
DNA (2754bp) protein (918aa)
[protein-PII] uridylyltransferase (EC:2.7.7.59); K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59]
Bifunctional uridylyltransferase/uridylyl-removing enzyme n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WL27_9SPHN
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000256|HAMAP-Rule:MF_00277}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
Displaying items 1-30 of 64 in total

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