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SCNpilot_cont_300_bf_scaffold_889_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_889_curated_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1618)
DNA (1617bp) protein (539aa)
methylase n=1 Tax=Sphingobium xenophagum RepID=UPI00036641BA
Uncharacterized protein {ECO:0000313|EMBL:GAO52904.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_889_curated_2
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1870..3066
DNA (1197bp) protein (399aa)
cobyrinic acid a,c-diamide synthase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3CE13
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:KHS45081.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
cobyrinic acid a,c-diamide synthase
SCNpilot_cont_300_bf_scaffold_889_curated_3
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3056..4120
DNA (1065bp) protein (355aa)
chromosome partitioning protein ParB n=1 Tax=Sphingomonas melonis RepID=UPI000368E5D2
chromosome-partitioning protein ParB; K03497 chromosome partitioning protein, ParB family
Chromosome partitioning protein, ParB family {ECO:0000313|EMBL:CCA89896.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_300_bf_scaffold_889_curated_4
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4149..5432
DNA (1284bp) protein (428aa)
Plasmid replication initiator protein-like protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EKC8_9SPHN
Plasmid replication initiator protein-like protein {ECO:0000313|EMBL:EHJ58231.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
plasmid replication initiator protein-like protein
SCNpilot_cont_300_bf_scaffold_889_curated_5
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6238..6942
DNA (705bp) protein (235aa)
Soluble lytic murein transglycosylase-like protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2FTF4_9SPHN
Soluble lytic murein transglycosylase-like protein {ECO:0000313|EMBL:EJL20405.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
lytic transglycosylase, catalytic
SCNpilot_cont_300_bf_scaffold_889_curated_6
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6909..8297)
DNA (1389bp) protein (463aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1N913_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EAT07420.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
SCNpilot_cont_300_bf_scaffold_889_curated_7
unknown

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comp(8625..9167)
DNA (543bp) protein (181aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_889_curated_8
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9894..10223
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2G3Q2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJL24270.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_889_curated_9
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10462..10746
DNA (285bp) protein (95aa)
Type IV conjugative transfer system protein TraL n=1 Tax=Novosphingobium sp. AP12 RepID=J3A014_9SPHN
Scaffold12, whole genome shotgun sequence {ECO:0000313|EMBL:KIS31284.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
TraL family protein; K12068 conjugal transfer pilus assembly protein TraL
SCNpilot_cont_300_bf_scaffold_889_curated_10
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10748..11311
DNA (564bp) protein (188aa)
TraE protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2GNF7_9SPHN
TraE protein {ECO:0000313|EMBL:EJL24268.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
TraE family protein; K12067 conjugal transfer pilus assembly protein TraE
SCNpilot_cont_300_bf_scaffold_889_curated_11
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11308..12114
DNA (807bp) protein (269aa)
Putative uncharacterized protein n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z7S3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59302.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_889_curated_12
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12111..13517
DNA (1407bp) protein (469aa)
Sex pilus assembly and synthesis protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7S2_9SPHN
Sex pilus assembly and synthesis protein {ECO:0000313|EMBL:EGD59303.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
TraB pilus assembly family protein
SCNpilot_cont_300_bf_scaffold_889_curated_13
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13529..14431
DNA (903bp) protein (301aa)
Protein disulfide-isomerase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7S1_9SPHN
Protein disulfide-isomerase {ECO:0000313|EMBL:EGD59304.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_889_curated_14
Sphingomonas sp. ERG5, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14428..15246
DNA (819bp) protein (273aa)
Outer membrane lipoprotein TraV of type IV secretion system n=1 Tax=Sphingomonas sp. ERG5 RepID=T1YW90_9SPHN
Outer membrane lipoprotein TraV of type IV secretion system {ECO:0000313|EMBL:AGU69267.1}; TaxID=1381597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. ERG5.;"
hypothetical protein; K12064 conjugal transfer pilus assembly protein TraV
SCNpilot_cont_300_bf_scaffold_889_curated_15
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15253..17799
DNA (2547bp) protein (849aa)
Type-IV secretion system protein TraC n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7R9_9SPHN
Type-IV secretion system protein TraC {ECO:0000313|EMBL:EGD59306.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
Type-IV secretion system protein TraC; K12063 conjugal transfer ATP-binding protein TraC
SCNpilot_cont_300_bf_scaffold_889_curated_16
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17796..18137
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI0002FB4C27
Uncharacterized protein {ECO:0000313|EMBL:EGD59307.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_889_curated_17
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18134..18754
DNA (621bp) protein (207aa)
conjugal transfer protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4CDE0
Uncharacterized protein {ECO:0000313|EMBL:KHL24264.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_889_curated_18
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18738..19274
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI000367C420
Conjugal transfer protein {ECO:0000313|EMBL:EGD59309.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
type IV secretory pathway protease TraF-like protein
SCNpilot_cont_300_bf_scaffold_889_curated_19
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19313..20017
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HRV5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02070.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
Type-F conjugative transfer system protein TraW
SCNpilot_cont_300_bf_scaffold_889_curated_20
unknown

Not on your lists

20014..20334
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_889_curated_21
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20327..21346
DNA (1020bp) protein (340aa)
Sex pilus assembly and synthesis protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8U6_9SPHN
Sex pilus assembly and synthesis protein {ECO:0000313|EMBL:EGD59311.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
TraU family protein; K12060 conjugal transfer pilus assembly protein TraU
Displaying 21 items

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