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SCNpilot_cont_300_bf_scaffold_29_curated

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Displaying items 1-30 of 329 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_29_curated_1
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(131..448)
DNA (318bp) protein (106aa)
Cupin domain-containing protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2GD24_9SPHN
Cupin domain-containing protein {ECO:0000313|EMBL:EJL27780.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein; K11312 cupin 2 domain-containing protein
SCNpilot_cont_300_bf_scaffold_29_curated_2
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

638..1171
DNA (534bp) protein (178aa)
Hemerythrin hhE cation binding domain-containing protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S4Y1_9SPHN
hemerythrin hhE cation binding domain-containing protein
Hemerythrin hhE cation binding domain-containing protein {ECO:0000313|EMBL:AGH51100.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_300_bf_scaffold_29_curated_3
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1175..1630
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9H9M0_GLUDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAP57727.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
SCNpilot_cont_300_bf_scaffold_29_curated_4
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1627..2475)
DNA (849bp) protein (283aa)
haloacid dehalogenase n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A3BB47
haloacid dehalogenase
Haloacid dehalogenase-like hydrolase {ECO:0000313|EMBL:ABD26298.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_29_curated_5
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2462..3943)
DNA (1482bp) protein (494aa)
Pyruvate:Oxaloacetate transcarboxylase domain protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MPX0_9SPHN
Pyruvate:Oxaloacetate transcarboxylase domain protein {ECO:0000313|EMBL:CCW18991.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
pyruvate carboxyltransferase
SCNpilot_cont_300_bf_scaffold_29_curated_6
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3947..5275)
DNA (1329bp) protein (443aa)
carbamoyl-phosphate synthase L chain, ATP-binding; K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
Carbamoyl-phosphate synthase L chain, ATP-binding protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G773_NOVAD
Carbamoyl-phosphate synthase L chain, ATP-binding protein {ECO:0000313|EMBL:ABD26300.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_29_curated_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5287..5745)
DNA (459bp) protein (153aa)
acetyl-CoA carboxylase n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A6F567
Biotin carboxyl carrier protein {ECO:0000313|EMBL:GAO56032.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
biotin carboxyl carrier protein
SCNpilot_cont_300_bf_scaffold_29_curated_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5742..6980)
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G771_NOVAD
Transcriptional regulator {ECO:0000313|EMBL:GAO56033.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_29_curated_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7116..7931
DNA (816bp) protein (272aa)
IclR family transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B32829
Transcriptional regulator of iclR family {ECO:0000313|EMBL:GAO56034.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
IclR family transcriptional regulator; K05818 IclR family transcriptional regulator, mhp operon transcriptional activator
SCNpilot_cont_300_bf_scaffold_29_curated_10
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8059..9075
DNA (1017bp) protein (339aa)
Alcohol dehydrogenase superfamily, zinc-containing n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G769_NOVAD
alcohol dehydrogenase
Alcohol dehydrogenase superfamily, zinc-containing {ECO:0000313|EMBL:ABD26304.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_29_curated_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9142..9696
DNA (555bp) protein (185aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQS6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO56036.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_29_curated_12
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9693..10931
DNA (1239bp) protein (413aa)
Major facilitator superfamily MFS_1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G767_NOVAD
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABD26306.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_29_curated_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10951..11889
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B43E2C
Transcriptional regulator of araC family {ECO:0000313|EMBL:GAO56038.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
AraC family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_29_curated_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12022..14577
DNA (2556bp) protein (852aa)
TonB-denpendent receptor n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B65AD7
Uncharacterized protein {ECO:0000313|EMBL:GAO56039.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_29_curated_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14645..15178
DNA (534bp) protein (178aa)
2,4''''-dihydroxyacetophenone dioxygenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4C7D0
2,4'-dihydroxyacetophenone dioxygenase {ECO:0000313|EMBL:GAO56040.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2,4'-dihydroxyacetophenone dioxygenase
SCNpilot_cont_300_bf_scaffold_29_curated_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15201..15734
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G762_NOVAD
2,4'-dihydroxyacetophenone dioxygenase {ECO:0000313|EMBL:GAO56042.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_29_curated_17
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15748..16587
DNA (840bp) protein (280aa)
short-chain dehydrogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5C94C
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABD26313.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_29_curated_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16584..16904
DNA (321bp) protein (107aa)
cytochrome CBB3 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B77C63
4-cresol dehydrogenase [hydroxylating] cytochrome c subunit {ECO:0000313|EMBL:GAO53890.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cytochrome c, class I
SCNpilot_cont_300_bf_scaffold_29_curated_19
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16901..18520
DNA (1620bp) protein (540aa)
Twin-arginine translocation pathway signal n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G426_NOVAD
Twin-arginine translocation pathway signal protein {ECO:0000313|EMBL:KHS45000.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
twin-arginine translocation pathway signal protein
SCNpilot_cont_300_bf_scaffold_29_curated_20
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18520..19275
DNA (756bp) protein (252aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G425_NOVAD
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABD27398.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_29_curated_21
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19314..19850
DNA (537bp) protein (179aa)
tRNA modification GTPase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5C6DA
2,4'-dihydroxyacetophenone dioxygenase
2,4'-dihydroxyacetophenone dioxygenase {ECO:0000313|EMBL:ABD26310.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_29_curated_22
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19863..20870
DNA (1008bp) protein (336aa)
molecular chaperone GroES n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B373EC
Threonine dehydrogenase and related Zn-dependent dehydrogenases {ECO:0000313|EMBL:GAO56047.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Zn-dependent alcohol dehydrogenase
SCNpilot_cont_300_bf_scaffold_29_curated_23
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20878..22443
DNA (1566bp) protein (522aa)
Acyl-CoA synthetase {ECO:0000313|EMBL:BAK66831.1}; EC=6.2.1.- {ECO:0000313|EMBL:BAK66831.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Acyl-CoA synthetase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IHQ8_9SPHN
acyl-CoA synthetase
SCNpilot_cont_300_bf_scaffold_29_curated_24
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22469..23803)
DNA (1335bp) protein (445aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003685417
Sphingomonas taxi strain 30a NODE_29, whole genome shotgun sequence {ECO:0000313|EMBL:KIU27213.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
mcpAch2; methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
SCNpilot_cont_300_bf_scaffold_29_curated_25
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23956..24897)
DNA (942bp) protein (314aa)
UPI0003D019D2 related cluster n=1 Tax=unknown RepID=UPI0003D019D2
AraC family transcriptional regulator {ECO:0000313|EMBL:ESZ89075.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
putative bifunctional protein: class I glutamine amidotransferase-like, transcriptional regulator protein AraC/XylS family
SCNpilot_cont_300_bf_scaffold_29_curated_26
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25019..25825
DNA (807bp) protein (269aa)
AraC family transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B70519
Short-chain dehydrogenases of various substrate specificities {ECO:0000313|EMBL:GAO56520.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative oxidoreductase protein
SCNpilot_cont_300_bf_scaffold_29_curated_27
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25864..26628
DNA (765bp) protein (255aa)
short-chain dehydrogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B32FAC
Short-chain dehydrogenase {ECO:0000313|EMBL:ESZ89077.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_29_curated_28
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26674..27201
DNA (528bp) protein (176aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
Carboxymuconolactone decarboxylase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAJ3_9SPHN
ahpD; alkylhydroperoxidase AhpD core
SCNpilot_cont_300_bf_scaffold_29_curated_29
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27296..27712)
DNA (417bp) protein (139aa)
Uncharacterized protein n=2 Tax=Methylobacterium extorquens RepID=C5B518_METEA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS43550.1}; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
SCNpilot_cont_300_bf_scaffold_29_curated_30
Streptomyces sp. Mg1, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27739..28362
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Actinomadura flavalba RepID=UPI00037A724C
Putative uncharacterized protein {ECO:0000313|EMBL:EDX26804.1}; TaxID=465541 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. Mg1.;"
Displaying items 1-30 of 329 in total

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