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SCNpilot_cont_300_bf_scaffold_7_curated

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Displaying items 1-30 of 776 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_7_curated_1
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

634..864
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0I0N9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB05225.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
SCNpilot_cont_300_bf_scaffold_7_curated_2
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1055..2239
DNA (1185bp) protein (395aa)
Abi family protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F2W7_SPHCR
Abi family protein
Abi family protein {ECO:0000313|EMBL:AEG50779.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_cont_300_bf_scaffold_7_curated_3
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2706..4061
DNA (1356bp) protein (452aa)
Ppx/GppA phosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J2C8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB18275.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
SCNpilot_cont_300_bf_scaffold_7_curated_4
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4058..4753
DNA (696bp) protein (232aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
ribosomal RNA methyltransferase RrmJ/FtsJ; K02427 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
Ribosomal RNA large subunit methyltransferase E n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5L5_9SPHN
SCNpilot_cont_300_bf_scaffold_7_curated_5
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5002..5853)
DNA (852bp) protein (284aa)
Putative siderophore-interacting protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z4E1_9SPHN
Putative siderophore-interacting protein {ECO:0000313|EMBL:EGD60551.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_7_curated_6
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6009..8000)
DNA (1992bp) protein (664aa)
thrS; threonyl-tRNA synthetase (EC:3.1.1.- 6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
Threonine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00184}; EC=6.1.1.3 {ECO:0000255|HAMAP-Rule:MF_00184};; Threonyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00184}; Short=ThrRS {ECO:0000255|HAMAP-Rule:MF_00184};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Threonine--tRNA ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=SYT_NOVAD rbh
SCNpilot_cont_300_bf_scaffold_7_curated_7
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8089..8817
DNA (729bp) protein (243aa)
Putative hydrolase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJW3_9SPHN
Alpha/beta hydrolase family protein {ECO:0000313|EMBL:AKH43168.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hydrolase
SCNpilot_cont_300_bf_scaffold_7_curated_8
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8824..9693
DNA (870bp) protein (290aa)
Tetratricopeptide TPR_4 n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EC06_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK92284.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_7_curated_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9876..14621
DNA (4746bp) protein (1582aa)
NAD-specific glutamate dehydrogenase {ECO:0000313|EMBL:GAO54483.1}; EC=1.4.1.2 {ECO:0000313|EMBL:GAO54483.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glutamate dehydrogenase (NAD) (EC:1.4.1.2); K15371 glutamate dehydrogenase [EC:1.4.1.2]
glutamate dehydrogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B49917
SCNpilot_cont_300_bf_scaffold_7_curated_10
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14865..15929)
DNA (1065bp) protein (355aa)
Epoxyqueuosine reductase {ECO:0000256|HAMAP-Rule:MF_00916}; EC=1.17.99.6 {ECO:0000256|HAMAP-Rule:MF_00916};; Queuosine biosynthesis protein QueG {ECO:0000256|HAMAP-Rule:MF_00916}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
Epoxyqueuosine reductase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IES1_9SPHN
4Fe-4S ferredoxin
SCNpilot_cont_300_bf_scaffold_7_curated_11
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15984..16928
DNA (945bp) protein (315aa)
ABC-2 type transport system ATP-binding protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IGA7_9SPHN
ABC transporter ATP-binding protein
ABC-2 type transport system ATP-binding protein {ECO:0000313|EMBL:CCA91173.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_300_bf_scaffold_7_curated_12
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16925..18166
DNA (1242bp) protein (414aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2G4M4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJL24620.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
ABC transporter permease
SCNpilot_cont_300_bf_scaffold_7_curated_13
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18345..18806
DNA (462bp) protein (154aa)
putative methionine sulfoxide reductase, SelR; K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
Putative methionine sulfoxide reductase, SelR n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IGA9_9SPHN
Putative methionine sulfoxide reductase, SelR {ECO:0000313|EMBL:CCA91175.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_300_bf_scaffold_7_curated_14
Erythrobacter sp. NAP1, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18764..20596)
DNA (1833bp) protein (611aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WFL3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EAQ28650.1}; TaxID=237727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. NAP1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_7_curated_15
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20593..21003)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WFL5_9SPHN
Polysaccharide biosynthesis protein GtrA {ECO:0000313|EMBL:KEO96482.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_7_curated_16
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21003..22640)
DNA (1638bp) protein (546aa)
hypothetical protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E147
FAD dependent oxidoreductase {ECO:0000313|EMBL:KHS47769.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_7_curated_17
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22813..24513
DNA (1701bp) protein (567aa)
Putative uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F0T1_SPHCR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG50403.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_cont_300_bf_scaffold_7_curated_18
Kluyvera ascorbata, Kluyvera, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24500..25591)
DNA (1092bp) protein (364aa)
Group 1 glycosyl transferase n=1 Tax=Burkholderia cepacia GG4 RepID=J7IXV1_BURCE
Glycosyltransferase {ECO:0000313|EMBL:KFC97280.1}; TaxID=1006000 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kluyvera.;" source="Kluyvera ascorbata ATCC 33433.;"
group 1 glycosyl transferase
SCNpilot_cont_300_bf_scaffold_7_curated_19
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25859..26245)
DNA (387bp) protein (129aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y9G4_9RHIZ
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_cont_300_bf_scaffold_7_curated_20
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26242..26940)
DNA (699bp) protein (233aa)
Methyltransferase type 11 n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SR37_PLAL2
Uncharacterized protein {ECO:0000313|EMBL:KEY46160.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
methyltransferase type 11
SCNpilot_cont_300_bf_scaffold_7_curated_21
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26940..28118)
DNA (1179bp) protein (393aa)
Glycosyl transferase family 2 n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F0S8_SPHCR
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:AEG50400.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_cont_300_bf_scaffold_7_curated_22
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28448..28726)
DNA (279bp) protein (93aa)
Histone-like DNA-binding protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5H3_9SPHN
Histone-like DNA-binding protein {ECO:0000313|EMBL:EGD60352.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
integration host factor subunit beta; K05788 integration host factor subunit beta
SCNpilot_cont_300_bf_scaffold_7_curated_23
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28915..29268)
DNA (354bp) protein (118aa)
GntR family transcriptional regulator n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI00037A6856
GntR family transcriptional regulator {ECO:0000313|EMBL:KEO85690.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_7_curated_24
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29374..31158
DNA (1785bp) protein (595aa)
amino acid transporter n=1 Tax=Sphingomonas echinoides RepID=UPI00026CD4F2
Amino acid transporter {ECO:0000313|EMBL:EQB04401.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
amino acid/peptide transporter
SCNpilot_cont_300_bf_scaffold_7_curated_25
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31175..31861
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A1Z5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48773.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_7_curated_26
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32121..32627)
DNA (507bp) protein (169aa)
Fe2+/Zn2+ uptake regulation protein n=1 Tax=Novosphingobium sp. AP12 RepID=J3AD04_9SPHN
Fe2+/Zn2+ uptake regulation protein {ECO:0000313|EMBL:EJL30056.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
Fur family transcriptional regulator, zinc uptake regulator; K09823 Fur family transcriptional regulator, zinc uptake regulator
SCNpilot_cont_300_bf_scaffold_7_curated_27
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32647..33336)
DNA (690bp) protein (230aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401, ECO:0000256|SAAS:SAAS00005567};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
methionine sulfoxide reductase A (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC16_NOVAD
SCNpilot_cont_300_bf_scaffold_7_curated_28
unknown

Not on your lists

comp(33339..33485)
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_7_curated_29
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33665..35239)
DNA (1575bp) protein (525aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3 3.5.4.10); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
IMP cyclohydrolase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B46EE8
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_cont_300_bf_scaffold_7_curated_30
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35570..37444)
DNA (1875bp) protein (625aa)
Heparinase II/III-like n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IFL3_9SPHN
heparinase II/III-like
Heparinase II/III-like {ECO:0000313|EMBL:CCA91088.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Displaying items 1-30 of 776 in total

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