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SCNpilot_cont_300_bf_scaffold_135_curated

Search features with annotation key words

Displaying items 1-30 of 147 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_135_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..106)
DNA (105bp) protein (35aa)
electron transfer flavoprotein subunit beta n=1 Tax=Sphingomonas elodea RepID=UPI00026319D3
electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit
Electron transfer flavoprotein subunit beta {ECO:0000313|EMBL:ENY81733.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_cont_300_bf_scaffold_135_curated_2
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

290..892
DNA (603bp) protein (201aa)
TetR-family transcriptional regulator n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z7R4_SPHJU
Regulatory protein TetR {ECO:0000313|EMBL:KEQ52063.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
TetR-family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_135_curated_3
unknown

Not on your lists

comp(1418..2152)
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0003706960
SCNpilot_cont_300_bf_scaffold_135_curated_4
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2605..4290)
DNA (1686bp) protein (562aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9CAW4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ80585.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
SCNpilot_cont_300_bf_scaffold_135_curated_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4325..7171)
DNA (2847bp) protein (949aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI00026302E9
Uncharacterized protein {ECO:0000313|EMBL:AJP71060.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_135_curated_6
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7555..9300
DNA (1746bp) protein (582aa)
hypothetical protein n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI0002E6EBBB
TPR repeat-containing protein {ECO:0000313|EMBL:EGD59576.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
TPR repeat-containing protein
SCNpilot_cont_300_bf_scaffold_135_curated_7
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(9448..11193)
DNA (1746bp) protein (582aa)
sulfatase; K01130 arylsulfatase [EC:3.1.6.1]
arylsulfatase n=1 Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B57EB5
Tax=RBG_16_Planctomycetes_55_9_curated
SCNpilot_cont_300_bf_scaffold_135_curated_8
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12122..13234
DNA (1113bp) protein (371aa)
S-(hydroxymethyl)glutathione dehydrogenase; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
S-(hydroxymethyl)glutathione dehydrogenase {ECO:0000256|RuleBase:RU362016}; EC=1.1.1.284 {ECO:0000256|RuleBase:RU362016};; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
Alcohol dehydrogenase class III/S-(Hydroxymethyl)glutathione dehydrogenase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V5H9_SPHWW
SCNpilot_cont_300_bf_scaffold_135_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13251..13631
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP17_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65656.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_300_bf_scaffold_135_curated_10
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13631..14053
DNA (423bp) protein (141aa)
NADH dehydrogenase (Ubiquinone), 24 kDa subunit n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z799_9SPHN
NADH dehydrogenase (Ubiquinone), 24 kDa subunit {ECO:0000313|EMBL:EGD59517.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
NAD-dependent formate dehydrogenase subunit gamma; K00127 formate dehydrogenase, gamma subunit
SCNpilot_cont_300_bf_scaffold_135_curated_11
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14053..15561
DNA (1509bp) protein (503aa)
NADH dehydrogenase (Quinone) n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7A0_9SPHN
NADH dehydrogenase (Quinone) {ECO:0000313|EMBL:EGD59518.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
NAD-dependent formate dehydrogenase subunit beta; K00124 formate dehydrogenase, beta subunit
SCNpilot_cont_300_bf_scaffold_135_curated_12
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15558..16091
DNA (534bp) protein (178aa)
molybdenum cofactor guanylyltransferase; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77]
Molybdenum cofactor guanylyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAE2_NOVAD
Molybdenum cofactor guanylyltransferase {ECO:0000313|EMBL:KHS46110.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
SCNpilot_cont_300_bf_scaffold_135_curated_13
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16081..18915
DNA (2835bp) protein (945aa)
NAD-dependent formate dehydrogenase subunit alpha; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2]
Formate dehydrogenase, alpha subunit n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7A2_9SPHN
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:EGD59520.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_cont_300_bf_scaffold_135_curated_14
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18912..19121
DNA (210bp) protein (70aa)
formate dehydrogenase, delta subunit; K00126 formate dehydrogenase, delta subunit [EC:1.2.1.2]
Formate dehydrogenase, delta subunit n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7A3_9SPHN
Formate dehydrogenase, delta subunit {ECO:0000313|EMBL:EGD59521.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_cont_300_bf_scaffold_135_curated_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19124..19534
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9I6_NOVAD
Isopropylmalate/homocitrate/citramalate synthases {ECO:0000313|EMBL:GAO56358.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_135_curated_16
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19793..20503)
DNA (711bp) protein (237aa)
Two component response regulator KdpE n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IJZ9_9SPHN
two component response regulator KdpE
Two component response regulator KdpE {ECO:0000313|EMBL:CCA91817.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_300_bf_scaffold_135_curated_17
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20708..21910)
DNA (1203bp) protein (401aa)
aminotransferase (EC:2.6.1.-); K14261 alanine-synthesizing transaminase [EC:2.6.1.-]
Aminotransferase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZC97_9SPHN
Aminotransferase {ECO:0000313|EMBL:EGD57695.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_cont_300_bf_scaffold_135_curated_18

Not on your lists

22192..24201
DNA (2010bp) protein (670aa)
polyhydroxyalkanoate synthase (EC:2.3.1.-); K03821 polyhydroxyalkanoate synthase [EC:2.3.1.-]
Polyhydroxyalkanoate synthase n=1 Tax=uncultured bacterium RepID=A3RGX4_9BACT
Polyhydroxyalkanoate synthase {ECO:0000313|EMBL:ABN71559.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_cont_300_bf_scaffold_135_curated_19
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24513..25469
DNA (957bp) protein (319aa)
Phasin n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZCA0_9SPHN
Phasin {ECO:0000313|EMBL:EGD57693.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
phasin
SCNpilot_cont_300_bf_scaffold_135_curated_20
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25750..26118
DNA (369bp) protein (123aa)
ATP-dependent Clp protease adaptor protein ClpS n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB27_NOVAD
ATP-dependent Clp protease adapter protein ClpS {ECO:0000313|EMBL:AKH42597.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
ATP-dependent Clp protease adaptor protein ClpS; K06891 ATP-dependent Clp protease adaptor protein ClpS
SCNpilot_cont_300_bf_scaffold_135_curated_21

Not on your lists

26316..27545
DNA (1230bp) protein (410aa)
Putative permease n=1 Tax=uncultured bacterium RepID=A3RGX1_9BACT
Putative permease {ECO:0000313|EMBL:ABN71556.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
permease YjgP/YjgQ
SCNpilot_cont_300_bf_scaffold_135_curated_22

Not on your lists

27542..28636
DNA (1095bp) protein (365aa)
Putative permease n=1 Tax=uncultured bacterium RepID=A3RGX0_9BACT
Putative permease {ECO:0000313|EMBL:ABN71555.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
lipopolysaccharide export system permease; K11720 lipopolysaccharide export system permease protein
SCNpilot_cont_300_bf_scaffold_135_curated_23
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28817..29701
DNA (885bp) protein (295aa)
fatty acid hydroxylase n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B319CF
Fatty acid hydroxylase {ECO:0000313|EMBL:AHE55236.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
fatty acid hydroxylase
SCNpilot_cont_300_bf_scaffold_135_curated_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29831..30982
DNA (1152bp) protein (384aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B307EE
Uncharacterized protein {ECO:0000313|EMBL:GAO54272.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_135_curated_25
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31278..32042
DNA (765bp) protein (255aa)
Two-component response regulator n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PCX3_9SPHN
Putative transcriptional regulatory protein pdtaR {ECO:0000313|EMBL:AKH42591.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
two-component response regulator
SCNpilot_cont_300_bf_scaffold_135_curated_26
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32033..33796)
DNA (1764bp) protein (588aa)
Blue-light-activated histidine kinase 1 {ECO:0000313|EMBL:AKH42625.1}; EC=2.7.13.3 {ECO:0000313|EMBL:AKH42625.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
signal transduction histidine kinase (EC:2.7.3.-)
Signal transduction histidine kinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB38_NOVAD
SCNpilot_cont_300_bf_scaffold_135_curated_27
unknown

Not on your lists

33946..34125
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_135_curated_28
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34122..34700
DNA (579bp) protein (193aa)
RNA polymerase sigma70 n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002E6802D
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAD49245.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
FecI-like sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_135_curated_29
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34697..35968)
DNA (1272bp) protein (424aa)
Na+/H+ dicarboxylate symporter n=1 Tax=Novosphingobium sp. AP12 RepID=J2FV05_9SPHN
Na+/H+ dicarboxylate symporter {ECO:0000313|EMBL:EJL20995.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
sodium:dicarboxylate symporter
SCNpilot_cont_300_bf_scaffold_135_curated_30
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36119..37456
DNA (1338bp) protein (446aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
phosphoglucosamine mutase (EC:5.4.2.10); K03431 phosphoglucosamine mutase [EC:5.4.2.10]
Phosphoglucosamine mutase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VS27_9SPHN
Displaying items 1-30 of 147 in total

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