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scnpilot_p_inoc_scaffold_28_curated

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Displaying items 1-30 of 338 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_28_curated_1

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comp(3..146)
DNA (144bp) protein (48aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CAE0_SPHS2
Uncharacterized protein {ECO:0000313|EMBL:KKK90741.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
scnpilot_p_inoc_scaffold_28_curated_2
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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470..1987
DNA (1518bp) protein (506aa)
hypothetical protein; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
Putative uncharacterized protein id=4595490 bin=GWC2_Bacteroidetes_46_850 species=Alistipes indistinctus genus=Alistipes taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
Tax=GWC2_Bacteroidetes_46_850_curated
scnpilot_p_inoc_scaffold_28_curated_3
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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2071..3426
DNA (1356bp) protein (452aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036154E5
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_28_curated_4
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3549..6008
DNA (2460bp) protein (820aa)
pdhE; PdhE (EC:1.2.4.4)
dehydrogenase n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003784C52
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_28_curated_5
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6012..7214
DNA (1203bp) protein (401aa)
Putative uncharacterized protein id=1885497 bin=GWD2_Bacteroidales_45_23 species=Alistipes indistinctus genus=Alistipes taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_28_curated_6
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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7224..9182
DNA (1959bp) protein (653aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003618E27
short-chain dehydrogenase/reductase SDR
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_28_curated_7
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9194..10462
DNA (1269bp) protein (423aa)
alcohol dehydrogenase id=4595501 bin=GWC2_Bacteroidetes_46_850 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
alcohol dehydrogenase, zinc-binding domain protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_28_curated_8
GWB2_Bacteroidetes_41_8_curated, Bacteroidia, Bacteroidetes, Bacteria

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10582..11997
DNA (1416bp) protein (472aa)
hypothetical protein n=1 Tax=Bacteroides propionicifaciens RepID=UPI0003681474
hypothetical protein
Tax=GWB2_Bacteroidetes_41_8_curated
scnpilot_p_inoc_scaffold_28_curated_9
Bacteroides sp. CAG:598, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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12094..12780
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:598 RepID=R5CEX3_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCX62281.1}; TaxID=1262743 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:598.;"
two component transcriptional regulator, winged helix family
scnpilot_p_inoc_scaffold_28_curated_10
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

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12806..14038
DNA (1233bp) protein (411aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003693FD5
histidine kinase
Tax=GWF2_Bacteroidetes_35_48_curated
scnpilot_p_inoc_scaffold_28_curated_11
Pseudomonas resinovorans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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14109..14483
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6AL89_PSERE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN46048.1}; TaxID=1245471 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas resinovorans NBRC 106553.;"
scnpilot_p_inoc_scaffold_28_curated_12
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(14579..14917)
DNA (339bp) protein (113aa)
Biotin/lipoyl attachment domain-containing protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T337_PALPW
biotin/lipoyl attachment domaiN-containing protein
Biotin/lipoyl attachment domain-containing protein {ECO:0000313|EMBL:ADQ79131.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_13
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(14941..16485)
DNA (1545bp) protein (515aa)
carboxyl transferase (EC:6.4.1.3)
Carboxyl transferase {ECO:0000313|EMBL:ADQ79132.1}; EC=6.4.1.3 {ECO:0000313|EMBL:ADQ79132.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Carboxyl transferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T338_PALPW
scnpilot_p_inoc_scaffold_28_curated_14
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16584..17102)
DNA (519bp) protein (173aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T339_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ79133.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_15
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17099..18463)
DNA (1365bp) protein (455aa)
Lytic transglycosylase catalytic n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3Q3_PALPW
lytic transglycosylase
Lytic transglycosylase catalytic {ECO:0000313|EMBL:ADQ79347.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_16
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(18585..20375)
DNA (1791bp) protein (597aa)
arginyL-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19]
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Arginine--tRNA ligase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7D0_PALPW
scnpilot_p_inoc_scaffold_28_curated_17
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20623..21198)
DNA (576bp) protein (192aa)
Electron transport complex, RnfABCDGE type, A subunit n=2 Tax=Bacteroides RepID=B3CEJ5_9BACE
electron transport complex, RnfABCDGE type, A subunit; K03617 electron transport complex protein RnfA
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_28_curated_18
Bacteroides intestinalis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21203..21796)
DNA (594bp) protein (198aa)
Electron transport complex, RnfABCDGE type, E subunit n=2 Tax=Bacteroides RepID=B3CEJ6_9BACE
Electron transport complex subunit E {ECO:0000256|HAMAP-Rule:MF_00478}; TaxID=471870 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides intestinalis DSM 17393.;"
electron transport complex, RnfABCDGE type, E subunit; K03613 electron transport complex protein RnfE
scnpilot_p_inoc_scaffold_28_curated_19
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21810..22409)
DNA (600bp) protein (200aa)
Electron transport complex rnfabcdge type G subunit n=1 Tax=Bacteroides sp. CAG:98 RepID=R7NSI0_9BACE
electron transport complex, RnfABCDGE type, G subunit; K03612 electron transport complex protein RnfG
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_28_curated_20
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(22449..23417)
DNA (969bp) protein (323aa)
Electron transport complex, RnfABCDGE type, D subunit n=3 Tax=Parabacteroides merdae RepID=A7AKV3_9PORP
Electron transport complex subunit D {ECO:0000256|HAMAP-Rule:MF_00462}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HGS0025.;"
Na+-transporting NADH:ubiquinone oxidoreductase electron transport complex protein RnfD; K03614 electron transport complex protein RnfD
scnpilot_p_inoc_scaffold_28_curated_21
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23427..24758)
DNA (1332bp) protein (444aa)
Electron transport complex protein RnfC n=5 Tax=Bacteroidales RepID=A6L9C7_PARD8
electron transport complex protein RnfC; K03615 electron transport complex protein RnfC
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_28_curated_22
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24822..25715)
DNA (894bp) protein (298aa)
Electron transport complex, RnfABCDGE type, B subunit id=1847017 bin=GWD2_Bacteroidales_45_23 species=Tannerella forsythia genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes
rnfB; RnfABCDGE type electron transport complex subunit B
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_28_curated_23
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25705..26127)
DNA (423bp) protein (141aa)
Positive regulator of sigma(E), RseC/MucC n=1 Tax=Bacteroides ovatus ATCC 8483 RepID=A7LWN0_BACOV
positive regulator of sigma(E), RseC/MucC
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_28_curated_24
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26308..27579)
DNA (1272bp) protein (424aa)
seryL-tRNA synthetase (EC:6.1.1.11); K01875 seryl-tRNA synthetase [EC:6.1.1.11]
Seryl-tRNA synthetase {ECO:0000313|EMBL:ADQ79427.1}; EC=6.1.1.11 {ECO:0000313|EMBL:ADQ79427.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Seryl-tRNA synthetase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3Y3_PALPW
scnpilot_p_inoc_scaffold_28_curated_25
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(27689..27955)
DNA (267bp) protein (89aa)
50S ribosomal protein L27 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3Y4_PALPW
LSU ribosomal protein l27p; K02899 large subunit ribosomal protein L27
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_26
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(27983..28297)
DNA (315bp) protein (105aa)
50S ribosomal protein L21 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3Y5_PALPW
LSU ribosomal protein l21p; K02888 large subunit ribosomal protein L21
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_27
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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comp(28493..30091)
DNA (1599bp) protein (533aa)
Transporter, small conductance mechanosensitive ion channel MscS family protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G1G3_9SPHI
mechanosensitive ion channel protein MscS
Tax=BJP_IG2103_Bacteroidetes_41_9
scnpilot_p_inoc_scaffold_28_curated_28
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30155..30880)
DNA (726bp) protein (242aa)
tryptophan synthase subunit alpha (EC:4.2.1.20); K01695 tryptophan synthase alpha chain [EC:4.2.1.20]
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Tryptophan synthase alpha chain n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8I1_PALPW
scnpilot_p_inoc_scaffold_28_curated_29
Coprobacter fastidiosus, Coprobacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30949..31566)
DNA (618bp) protein (206aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; TaxID=1349822 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Coprobacter.;" source="Coprobacter fastidiosus NSB1.;"
phosphoribosylanthranilate isomerase (EC:5.3.1.24); K01817 phosphoribosylanthranilate isomerase [EC:5.3.1.24]
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Coprobacter fastidiosus NSB1 RepID=U5CB08_9PORP
scnpilot_p_inoc_scaffold_28_curated_30
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31584..32363)
DNA (780bp) protein (260aa)
indole-3-glycerol phosphate synthase (EC:4.1.1.48); K01609 indole-3-glycerol phosphate synthase [EC:4.1.1.48]
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Indole-3-glycerol phosphate synthase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8H9_PALPW
Displaying items 1-30 of 338 in total

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