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scnpilot_p_inoc_scaffold_377_curated

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_377_curated_1
unknown

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2..490
DNA (489bp) protein (163aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_377_curated_2
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(532..1209)
DNA (678bp) protein (226aa)
ribosomal large subunit pseudouridine synthase d (EC:5.4.99.-); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
Ribosomal large subunit pseudouridine synthase D {ECO:0000313|EMBL:ADQ78854.1}; EC=5.4.99.- {ECO:0000313|EMBL:ADQ78854.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Ribosomal large subunit pseudouridine synthase D n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T2B0_PALPW
scnpilot_p_inoc_scaffold_377_curated_3
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(1213..2490)
DNA (1278bp) protein (426aa)
Uracil-xanthine permease id=4537139 bin=GWF2_Bacteroidetes_42_66 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_42_66 organism_group=Bacteroidetes organism_desc=a73
uraciL-xanthine permease; K02824 uracil permease
Tax=GWE2_Bacteroidetes_42_39_curated
scnpilot_p_inoc_scaffold_377_curated_4
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(2497..3261)
DNA (765bp) protein (255aa)
RNA methyltransferase, trmh family, group 3; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
RNA methyltransferase, TrmH family, group 3 id=4071999 bin=GWF2_Bacteroidetes_49_14 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
Tax=GWF2_Bacteroidetes_49_14_curated
scnpilot_p_inoc_scaffold_377_curated_5
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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3337..4290
DNA (954bp) protein (318aa)
Putative uncharacterized protein id=4071998 bin=GWF2_Bacteroidetes_49_14 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
hypothetical protein
Tax=GWF2_Bacteroidetes_49_14_curated
scnpilot_p_inoc_scaffold_377_curated_6
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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4353..6842
DNA (2490bp) protein (830aa)
TonB-dependent receptor plug id=4071997 bin=GWF2_Bacteroidetes_49_14 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
tonb-dependent receptor plug
Tax=GWF2_Bacteroidetes_49_14_curated
scnpilot_p_inoc_scaffold_377_curated_7
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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6877..8076
DNA (1200bp) protein (400aa)
aminotransferase class i and ii; K00812 aspartate aminotransferase [EC:2.6.1.1]
Aminotransferase class I and II n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3C0_PALPW
Tax=GWF2_Bacteroidetes_49_14_curated
scnpilot_p_inoc_scaffold_377_curated_8
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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8080..9318
DNA (1239bp) protein (413aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3B8_PALPW
hypothetical protein; K09808 lipoprotein-releasing system permease protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ79212.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_377_curated_9
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(9319..10125)
DNA (807bp) protein (269aa)
Glucosamine-6-phosphate deaminase {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029492}; EC=3.5.99.6 {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029496};; GlcN6P deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; Glucosamine-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01241}; TaxID=1262936 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
nagB; glucosamine-6-phosphate deaminase; K02564 glucosamine-6-phosphate deaminase [EC:3.5.99.6]
Glucosamine-6-phosphate deaminase n=1 Tax=Prevotella sp. CAG:873 RepID=R7J3Y1_9BACT
scnpilot_p_inoc_scaffold_377_curated_10
Tannerella sp. CAG:51, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(10167..13238)
DNA (3072bp) protein (1024aa)
Chondroitin sulfate ABC lyase n=2 Tax=Porphyromonadaceae RepID=R7DNA7_9PORP
Chondroitin sulfate ABC lyase {ECO:0000256|PIRNR:PIRNR034515}; Chondroitin ABC eliminase {ECO:0000256|PIRNR:PIRNR034515}; Chondroitin ABC lyase {ECO:0000256|PIRNR:PIRNR034515}; Chondroitinase ABC {ECO:0000256|PIRNR:PIRNR034515}; TaxID=1262979 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella; environmental samples.;" source="Tannerella sp. CAG:51.;"
Lyase, catalytic./Polysaccharide lyase family 8, super-sandwich domain./Lyase, N terminal.
scnpilot_p_inoc_scaffold_377_curated_11
Tannerella sp. CAG:118, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(13244..14443)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Tannerella sp. CAG:118 RepID=R5IAA7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCY37289.1}; TaxID=1262978 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella; environmental samples.;" source="Tannerella sp. CAG:118.;"
putative unsaturated glucuronyl hydrolase
scnpilot_p_inoc_scaffold_377_curated_12
Tannerella sp. CAG:118, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(14455..17646)
DNA (3192bp) protein (1064aa)
Uncharacterized protein n=1 Tax=Tannerella sp. CAG:118 RepID=R5I0Q3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCY35703.1}; TaxID=1262978 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella; environmental samples.;" source="Tannerella sp. CAG:118.;"
polysaccharide lyase family 8
scnpilot_p_inoc_scaffold_377_curated_13
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(17643..20657)
DNA (3015bp) protein (1005aa)
chondroitin ABC endolyase 1 (EC:4.2.2.20); K08961 chondroitin-sulfate-ABC endolyase/exolyase [EC:4.2.2.20 4.2.2.21]
Chondroitin sulfate ABC lyase id=3296559 bin=GWF2_Bacteroidetes_49_14 species=Tannerella sp. 6_1_58FAA_CT1 genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
Tax=GWF2_Bacteroidetes_49_14_curated
scnpilot_p_inoc_scaffold_377_curated_14
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(20664..21602)
DNA (939bp) protein (313aa)
Putative uncharacterized protein id=3296556 bin=GWF2_Bacteroidetes_49_14 species=Prevotella saccharolytica genus=Prevotella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
hypothetical protein
Tax=GWF2_Bacteroidetes_49_14_curated
scnpilot_p_inoc_scaffold_377_curated_15
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(21623..23356)
DNA (1734bp) protein (578aa)
RagB/SusD domain protein id=3296553 bin=GWF2_Bacteroidetes_49_14 species=Bacteroides helcogenes genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
RagB/SusD domain protein
Tax=GWF2_Bacteroidetes_49_14_curated
scnpilot_p_inoc_scaffold_377_curated_16
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(23368..26520)
DNA (3153bp) protein (1051aa)
SusC/RagA family TonB-linked outer membrane protein n=2 Tax=Bacteroides RepID=E5CA71_9BACE
TonB-linked outer membrane , SusC/RagA family protein {ECO:0000313|EMBL:KDS18187.1}; TaxID=1339346 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus str. 3725 D1 iv.;"
Outer membrane receptor proteins, mostly Fe transport
scnpilot_p_inoc_scaffold_377_curated_17
Coprobacter sp. 177, Coprobacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(26565..28487)
DNA (1923bp) protein (641aa)
Polymorphic outer membrane protein, repeat-containing domain protein n=1 Tax=Paraprevotella xylaniphila YIT 11841 RepID=F3QWT3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KHM48563.1}; TaxID=1572646 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Coprobacter.;" source="Coprobacter sp. 177.;"
scnpilot_p_inoc_scaffold_377_curated_18
Desulfobacterium autotrophicum, Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(28717..30291)
DNA (1575bp) protein (525aa)
Putative uncharacterized protein n=1 Tax=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) RepID=C0QG16_DESAH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACN17595.1}; TaxID=177437 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium.;" source="Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2).;"
scnpilot_p_inoc_scaffold_377_curated_19
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

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comp(30441..31970)
DNA (1530bp) protein (510aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI0002EAA808
alpha-L-fucosidase
Tax=RBG_16_Aminicenantes_63_16_curated
scnpilot_p_inoc_scaffold_377_curated_20
Bacteroides faecis CAG:32, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(31982..34303)
DNA (2322bp) protein (774aa)
beta-hexosaminidase; K12373 hexosaminidase [EC:3.2.1.52] rbh
beta-hexosaminidase n=1 Tax=Marinilabilia salmonicolor RepID=UPI000299CE8F
Uncharacterized protein {ECO:0000313|EMBL:CDC90975.1}; TaxID=1263044 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides faecis CAG:32.;"
scnpilot_p_inoc_scaffold_377_curated_21
Bacteroides sp. CAG:598, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(34347..35933)
DNA (1587bp) protein (529aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:598 RepID=R5C4L6_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCX62848.1}; TaxID=1262743 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:598.;"
sulfatase
scnpilot_p_inoc_scaffold_377_curated_22
unknown

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36193..37299
DNA (1107bp) protein (369aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_377_curated_23
Bacteroides nordii, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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37430..39982
DNA (2553bp) protein (851aa)
Uncharacterized protein n=1 Tax=Bacteroides nordii CL02T12C05 RepID=I8X9N3_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY47570.1}; TaxID=997884 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides nordii CL02T12C05.;"
hypothetical protein
scnpilot_p_inoc_scaffold_377_curated_24
unknown

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40044..40529
DNA (486bp) protein (162aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_377_curated_25
Bacteroides nordii, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

40542..43745
DNA (3204bp) protein (1068aa)
SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Bacteroides nordii CL02T12C05 RepID=I8XBV6_9BACE
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:EIY47572.1}; TaxID=997884 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides nordii CL02T12C05.;"
outer membrane protein
scnpilot_p_inoc_scaffold_377_curated_26
Bacteroides nordii, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

43765..45663
DNA (1899bp) protein (633aa)
Uncharacterized protein n=1 Tax=Bacteroides nordii CL02T12C05 RepID=I9RXL6_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY47573.1}; TaxID=997884 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides nordii CL02T12C05.;"
hypothetical protein
scnpilot_p_inoc_scaffold_377_curated_27
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(45642..49679)
DNA (4038bp) protein (1346aa)
Response regulator receiver domain protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7BAN1_9PORP
Response regulator receiver domain protein {ECO:0000313|EMBL:EEC96515.1}; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
Signal transduction histidine kinase
scnpilot_p_inoc_scaffold_377_curated_28
Prevotella sp. S7 MS 2, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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49795..53388
DNA (3594bp) protein (1198aa)
Uncharacterized protein n=1 Tax=Parabacteroides goldsteinii CL02T12C30 RepID=K6ART3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KGI60856.1}; TaxID=1287488 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella sp. S7 MS 2.;"
glycoside hydrolase
scnpilot_p_inoc_scaffold_377_curated_29
Tannerella sp. CAG:51, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(53399..54907)
DNA (1509bp) protein (503aa)
Uncharacterized protein n=1 Tax=Tannerella sp. CAG:51 RepID=R7DKV5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD90781.1}; TaxID=1262979 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella; environmental samples.;" source="Tannerella sp. CAG:51.;"
arylsulfatase
scnpilot_p_inoc_scaffold_377_curated_30
Tannerella sp. CAG:51, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(54914..56863)
DNA (1950bp) protein (650aa)
Uncharacterized protein n=1 Tax=Tannerella sp. CAG:51 RepID=R7DJV4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD90228.1}; TaxID=1262979 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella; environmental samples.;" source="Tannerella sp. CAG:51.;"
Heparinase II/III-like protein.
Displaying items 1-30 of 53 in total

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