ggKbase home page

SCNpilot_cont_1000_bf_scaffold_48_curated_14

Organism: scnpilot_dereplicated_Pandoraea_1

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(12981..13274)

Top 3 Functional Annotations

Value Algorithm Source
Integration host factor subunit beta n=2 Tax=Pandoraea RepID=V5UI39_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 97.0
  • Bit_score: 196
  • Evalue 9.10e-48
Integration host factor subunit beta {ECO:0000256|HAMAP-Rule:MF_00381, ECO:0000256|RuleBase:RU003941}; Short=IHF-beta {ECO:0000256|HAMAP-Rule:MF_00381};; TaxID=93222 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sputorum.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 97.0
  • Bit_score: 196
  • Evalue 1.30e-47
ihfB; integration host factor subunit beta; K05788 integration host factor subunit beta similarity KEGG
DB: KEGG
  • Identity: 88.5
  • Coverage: 96.0
  • Bit_score: 174
  • Evalue 2.00e-41

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pandoraea sputorum → Pandoraea → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 294
ATGACCAAGTCTGAATTGGTCAACCAGTTGGCGGCGCGGTTTCCCCAGTTGGTGCTCAAGGATGCCGATTTCGCGGTGAAGACCATTCTCGATGCGATGGCAGACGCGCTTGCGCGCGGTCATCGAATCGAGATCCGCGGTTTCGGTAGCTTCGGGCTCAACCGTCGGCCACCGCGTGTCGGCCGCAATCCGAAGTCGGGTGAGAAAGTGATGGTGCCGGAGAAATTCGTGCCGCACTTCAAGCCCGGCAAGGAGTTGCGAGAGCGGGTTGATCACAAGGCGTCGGACCAATAA
PROTEIN sequence
Length: 98
MTKSELVNQLAARFPQLVLKDADFAVKTILDAMADALARGHRIEIRGFGSFGLNRRPPRVGRNPKSGEKVMVPEKFVPHFKPGKELRERVDHKASDQ*