ggKbase home page

SCNpilot_cont_1000_p_scaffold_788_curated

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_788_curated_1
Rhodococcus qingshengii, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(49..354)
DNA (306bp) protein (102aa)
Antibiotic biosynthesis monooxygenase n=2 Tax=Rhodococcus RepID=C3JPC2_RHOER
Uncharacterized protein {ECO:0000313|EMBL:EME14883.1}; TaxID=1278077 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus qingshengii BKS 20-40.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_788_curated_2
Aeromicrobium marinum, Aeromicrobium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

477..1394
DNA (918bp) protein (306aa)
Hydrolase, alpha/beta domain protein n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=E2SEZ7_9ACTO
Hydrolase, alpha/beta domain protein {ECO:0000313|EMBL:EFQ82241.1}; TaxID=585531 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Aeromicrobium.;" source="Aeromicrobium marinum DSM 15272.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_788_curated_3
Deinococcus geothermalis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(1395..2099)
DNA (705bp) protein (235aa)
DSBA oxidoreductase n=1 Tax=Deinococcus geothermalis (strain DSM 11300) RepID=Q1IWL7_DEIGD
DSBA oxidoreductase
DSBA oxidoreductase {ECO:0000313|EMBL:ABF46367.1}; TaxID=319795 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus geothermalis (strain DSM 11300).;"
SCNpilot_cont_1000_p_scaffold_788_curated_4
Streptomyces iranensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2108..3454)
DNA (1347bp) protein (449aa)
cysteine synthase n=1 Tax=Streptomyces rapamycinicus RepID=UPI00038313D2
Cystathionine beta-synthase {ECO:0000313|EMBL:CDR02102.1}; TaxID=576784 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces iranensis.;"
Cysteine synthase
SCNpilot_cont_1000_p_scaffold_788_curated_5
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3492..4061
DNA (570bp) protein (190aa)
SAM-dependent methyltransferase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE648
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:AEA25297.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_788_curated_6
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4115..4477)
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFDE90
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAQ02258.1}; TaxID=31964 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / DSM; 20744 / JCM 9667 / LMG 2889 / C-1) (Corynebacterium sepedonicum).;"
SCNpilot_cont_1000_p_scaffold_788_curated_7
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4547..5350)
DNA (804bp) protein (268aa)
shikimate dehydrogenase substrate binding domain-containing protein; K00014 shikimate dehydrogenase [EC:1.1.1.25]
Shikimate dehydrogenase substrate binding domain protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4D0W0_PSEUX
Shikimate dehydrogenase substrate binding domain protein {ECO:0000313|EMBL:AEA25812.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_788_curated_8
Streptomyces pluripotens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5387..5782
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Streptomyces vitaminophilus RepID=UPI0003660B8C
Methyltransferase {ECO:0000313|EMBL:KIE39424.1}; TaxID=1355015 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces pluripotens.;"
putative methyltransferase, YaeB/AF_0241 family
SCNpilot_cont_1000_p_scaffold_788_curated_9
Saccharomonospora azurea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5821..6567
DNA (747bp) protein (249aa)
Uncharacterized protein n=2 Tax=Saccharomonospora azurea RepID=H8GEB4_9PSEU
Short-chain dehydrogenase {ECO:0000313|EMBL:EHK80239.1}; TaxID=1114959 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora azurea SZMC 14600.;"
short chain dehydrogenase/reductase family oxidoreductase
SCNpilot_cont_1000_p_scaffold_788_curated_10
Rhodococcus sp. AW25M09, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6672..7538
DNA (867bp) protein (289aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Rhodococcus sp. AW25M09 RepID=L8DGC8_9NOCA
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:CCQ15774.1}; TaxID=1268303 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. AW25M09.;"
transporter
SCNpilot_cont_1000_p_scaffold_788_curated_11
Nocardia seriolae, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7535..8302
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Nocardia sp. BMG111209 RepID=UPI000368344F
Nitrate ABC transporter ATPase {ECO:0000313|EMBL:GAM44626.1}; TaxID=37332 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia seriolae.;"
nitrate/sulfonate/bicarbonate ABC transporter ATPase
SCNpilot_cont_1000_p_scaffold_788_curated_12
Rhodococcus sp. B7740, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8299..9111
DNA (813bp) protein (271aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H6G2_CELFA
Hydroxymethylpyrimidine ABC transporter, transmembrane component {ECO:0000313|EMBL:AJW38232.1}; TaxID=1564114 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. B7740.;"
binding-protein-dependent transport systems inner membrane component; K02050 NitT/TauT family transport system permease protein
SCNpilot_cont_1000_p_scaffold_788_curated_13
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9122..10243
DNA (1122bp) protein (374aa)
Putative ABC transporter substrate binding protein n=1 Tax=Frankia sp. CN3 RepID=G6HBK4_9ACTO
ABC transporter substrate binding protein; K02051 NitT/TauT family transport system substrate-binding protein
Putative ABC transporter substrate binding protein {ECO:0000313|EMBL:ADP83908.1}; Flags: Precursor;; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
SCNpilot_cont_1000_p_scaffold_788_curated_14
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10272..11246)
DNA (975bp) protein (325aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens RepID=F0Y457_AURAN
hypothetical protein; K11901 type VI secretion system protein ImpB
Uncharacterized protein {ECO:0000313|EMBL:ABA51917.1}; TaxID=320372 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (strain 1710b).;"
SCNpilot_cont_1000_p_scaffold_788_curated_15
Modestobacter sp. KNN45-2b, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11284..12411)
DNA (1128bp) protein (376aa)
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI0003819C0B
Methyltransferase type 11 {ECO:0000313|EMBL:KGH47748.1}; TaxID=1522368 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter sp. KNN45-2b.;"
type 11 methyltransferase
SCNpilot_cont_1000_p_scaffold_788_curated_16
Mycobacterium mageritense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12429..13532)
DNA (1104bp) protein (368aa)
High-affinity nickel-transport protein n=4 Tax=Amycolatopsis mediterranei RepID=I7ECZ9_AMYMS
High-affinity nickel-transporter, HoxN/HupN/NixA family {ECO:0000313|EMBL:CDO24425.1}; TaxID=53462 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium mageritense.;"
nixA; high-affinity nickel-transport protein
SCNpilot_cont_1000_p_scaffold_788_curated_17
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13635..14768
DNA (1134bp) protein (378aa)
membrane dipeptidase (EC:3.4.13.19); K01273 membrane dipeptidase [EC:3.4.13.19]
membrane dipeptidase n=1 Tax=Amycolatopsis benzoatilytica RepID=UPI0003634BEA
Putative dipeptidase {ECO:0000313|EMBL:CEL14664.1}; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium sp. MJ126-NF4.;"
SCNpilot_cont_1000_p_scaffold_788_curated_18
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14765..15088
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Streptomyces sp. HmicA12 RepID=UPI0003692D99
Uncharacterized protein {ECO:0000313|EMBL:CDP50176.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_788_curated_19
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15320..15955
DNA (636bp) protein (212aa)
Response regulator receiver and ANTAR domain protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN35_PSEUX
response regulator receiver and ANTAR domain-containing protein; K07183 response regulator NasT
Response regulator receiver and ANTAR domain protein {ECO:0000313|EMBL:AEA26048.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_788_curated_20
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16139..17371
DNA (1233bp) protein (411aa)
hypothetical protein n=1 Tax=Actinokineospora enzanensis RepID=UPI00036D5DB3
Branched-chain amino acid ABC transporter periplasmic amino acid-binding protein {ECO:0000313|EMBL:EWM12487.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_cont_1000_p_scaffold_788_curated_21
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17470..18399
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Actinokineospora enzanensis RepID=UPI000360A87A
High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) {ECO:0000313|EMBL:CEL17670.1}; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium sp. MJ126-NF4.;"
amino acid ABC transporter; K01997 branched-chain amino acid transport system permease protein
SCNpilot_cont_1000_p_scaffold_788_curated_22
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18396..20141
DNA (1746bp) protein (582aa)
hypothetical protein n=1 Tax=Actinokineospora enzanensis RepID=UPI0003810FAC
Putative membrane protein {ECO:0000313|EMBL:AHH95975.1}; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_cont_1000_p_scaffold_788_curated_23
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20138..20944
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Actinokineospora enzanensis RepID=UPI0003700C2E
High-affinity branched-chain amino acid transport ATP-binding protein LivG {ECO:0000313|EMBL:AHH95976.1}; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
branched-chain amino acid transport system ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_1000_p_scaffold_788_curated_24
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20941..21663
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Actinokineospora enzanensis RepID=UPI0003666370
Branched-chain amino acid transporter ATP-binding protein {ECO:0000313|EMBL:EWM12483.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
Branched-chain amino acid transport ATP-binding protein LivF
SCNpilot_cont_1000_p_scaffold_788_curated_25
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22004..22435)
DNA (432bp) protein (144aa)
aromatic compound degradation protein PaaI n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE802
phenylacetic acid degradation-like protein
Phenylacetic acid degradation-related protein {ECO:0000313|EMBL:AEA26042.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_788_curated_26
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22815..23582)
DNA (768bp) protein (256aa)
Methyltransferase type 11 n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN28_PSEUX
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:AEA26041.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_788_curated_27
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


23849..25336
DNA (1488bp) protein (496aa)
30S ribosomal protein S1 n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN27_PSEUX
RNA binding S1 domain-containing protein; K02945 small subunit ribosomal protein S1
RNA binding S1 domain protein {ECO:0000313|EMBL:AEA26040.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_788_curated_28
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25470..26153
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE807
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA26039.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_788_curated_29
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26243..27442
DNA (1200bp) protein (400aa)
coaE; dephospho-CoA kinase/protein folding accessory domain-containing protein (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24]
dephospho-CoA kinase n=1 Tax=Saccharopolyspora erythraea RepID=UPI0001D315B4
Dephospho-CoA kinase {ECO:0000313|EMBL:EWM12472.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
SCNpilot_cont_1000_p_scaffold_788_curated_30
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27560..28207
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE809
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEA26037.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Displaying items 1-30 of 41 in total

View Taxonomy