ggKbase home page

SCNpilot_cont_1000_p_scaffold_462_curated

Search features with annotation key words

Displaying items 1-30 of 129 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_462_curated_1
Mycobacterium mageritense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..443)
DNA (441bp) protein (147aa)
(NiFe) hydrogenase maturation protein HypF n=1 Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y8V8_THEBD
Hydrogenase maturation factor, HypF {ECO:0000313|EMBL:CDO21121.1}; TaxID=53462 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium mageritense.;"
(NiFe) hydrogenase maturation protein HypF; K04656 hydrogenase maturation protein HypF
SCNpilot_cont_1000_p_scaffold_462_curated_2
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

649..1692
DNA (1044bp) protein (348aa)
Hydrogenase small subunit n=3 Tax=Amycolatopsis mediterranei RepID=D8HMR5_AMYMU
hydrogenase small subunit
Hydrogenase small subunit {ECO:0000313|EMBL:AEK42351.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
SCNpilot_cont_1000_p_scaffold_462_curated_3
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1697..3508
DNA (1812bp) protein (604aa)
hydrogenase large subunit; K06281 hydrogenase large subunit [EC:1.12.99.6]
hydrogenase n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI000367ACDE
Hydrogenase large subunit {ECO:0000313|EMBL:AEK42350.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
SCNpilot_cont_1000_p_scaffold_462_curated_4
Streptomyces albus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3575..4108
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI00036B4F8C
Uncharacterized protein {ECO:0000313|EMBL:AJE87131.1}; TaxID=1888 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces albus.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_462_curated_5
Streptomyces katrae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4105..4710
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI00037078D6
Uncharacterized protein {ECO:0000313|EMBL:KJY26390.1}; TaxID=68223 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces katrae.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_462_curated_6
Streptomyces lydicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4704..5327
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Streptomyces sp. FxanaC1 RepID=UPI0003757486
Uncharacterized protein {ECO:0000313|EMBL:AJT62169.1}; TaxID=1403539 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces lydicus A02.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_462_curated_7
Streptomyces lydicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5324..6682
DNA (1359bp) protein (453aa)
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI0003718CC2
Uncharacterized protein {ECO:0000313|EMBL:AJT62168.1}; TaxID=1403539 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces lydicus A02.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_462_curated_8
Streptomyces sp. Tu 6176, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6679..7170
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Streptomyces sp. PsTaAH-124 RepID=UPI0003784A8B
Protease {ECO:0000313|EMBL:EYT82104.1}; TaxID=1470557 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. Tu 6176.;"
hybD; hydrogenase 2 maturation protease
SCNpilot_cont_1000_p_scaffold_462_curated_9
unknown

Not on your lists

7167..7280
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_462_curated_10
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7290..7526
DNA (237bp) protein (79aa)
Hydrogenase assembly chaperone hypC/hupF n=1 Tax=Frankia sp. (strain EAN1pec) RepID=A8L5A8_FRASN
hydrogenase assembly chaperone HypC/HupF; K04653 hydrogenase expression/formation protein HypC
Hydrogenase assembly chaperone hypC/hupF {ECO:0000313|EMBL:ABW11918.1}; TaxID=298653 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
SCNpilot_cont_1000_p_scaffold_462_curated_11
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7526..7855
DNA (330bp) protein (110aa)
Hydrogenase nickel incorporation protein hypA n=1 Tax=Frankia alni (strain ACN14a) RepID=Q0RN55_FRAAA
hypA1; hydrogenase nickel incorporation protein HypA; K04651 hydrogenase nickel incorporation protein HypA/HybF
Hydrogenase nickel incorporation protein hypA {ECO:0000313|EMBL:CAJ61037.1}; TaxID=326424 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
SCNpilot_cont_1000_p_scaffold_462_curated_12
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7857..8579
DNA (723bp) protein (241aa)
hydrogenase nickel incorporation protein HypB n=1 Tax=Amycolatopsis balhimycina RepID=UPI0003727052
hydrogenase nickel incorporation protein HypB; K04652 hydrogenase nickel incorporation protein HypB
Hydrogenase nickel incorporation protein HypB {ECO:0000313|EMBL:AEK42340.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
SCNpilot_cont_1000_p_scaffold_462_curated_13
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8534..8914)
DNA (381bp) protein (127aa)
Transcriptional regulator, PadR-like family n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CRP9_PSEUX
PadR-like family transcriptional regulator
Transcriptional regulator, PadR-like family {ECO:0000313|EMBL:AEA27266.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_462_curated_14
Saccharomonospora cyanea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9038..9856)
DNA (819bp) protein (273aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; Flags: Precursor;; TaxID=882082 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora cyanea NA-134.;"
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; K00991 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Saccharomonospora cyanea NA-134 RepID=H5XQS9_9PSEU
SCNpilot_cont_1000_p_scaffold_462_curated_15
unknown

Not on your lists

9980..10354
DNA (375bp) protein (125aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_462_curated_16
Methanobacterium paludis, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

10348..10725
DNA (378bp) protein (126aa)
Iron sulfur domain-containing, CDGSH-type n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D5Z5_METSW
CDGSH-type iron sulfur domain-containing protein
Iron sulfur domain-containing, CDGSH-type {ECO:0000313|EMBL:AEG19365.1}; TaxID=868131 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium paludis (strain DSM 25820 / JCM 18151 / SWAN1).;"
SCNpilot_cont_1000_p_scaffold_462_curated_17
unknown

Not on your lists

10778..11452
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI0003823B10
Membrane protein ORF71 {ECO:0000313|EMBL:ADA57834.2}; TaxID=1283343 species="Viruses; dsDNA viruses, no RNA stage; Herpesvirales; Alloherpesviridae; Cyprinivirus.;" source="Anguillid herpesvirus 1 (isolate Anguilla; anguilla/Netherlands/500138/1998) (AngHV-1) (European eel; herpesvirus).;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_462_curated_18
Rhodococcus wratislaviensis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11521..12414
DNA (894bp) protein (298aa)
short-chain dehydrogenase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFF0F7
Protochlorophyllide reductase {ECO:0000313|EMBL:ELB87429.1}; TaxID=1195242 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus wratislaviensis IFP 2016.;"
oxidoreductase
SCNpilot_cont_1000_p_scaffold_462_curated_19
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12518..14503
DNA (1986bp) protein (662aa)
Cell envelope-related transcriptional attenuator n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CWU8_PSEUX
cell envelope-related transcriptional attenuator
Cell envelope-related transcriptional attenuator {ECO:0000313|EMBL:AEA23850.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_462_curated_20
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14523..15833
DNA (1311bp) protein (437aa)
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI0003822DDA
MFS superfamily tartrate symporter
MFS transporter {ECO:0000313|EMBL:EQD87654.1}; TaxID=1382595 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea D.;"
SCNpilot_cont_1000_p_scaffold_462_curated_21
unknown

Not on your lists

comp(15707..15964)
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_462_curated_22
Streptomyces griseorubens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15974..16648)
DNA (675bp) protein (225aa)
chemotaxis protein CheY n=1 Tax=Streptomyces sp. LaPpAH-108 RepID=UPI000377028D
Transcriptional regulatory protein {ECO:0000256|PIRNR:PIRNR006171}; TaxID=66897 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces griseorubens.;"
response regulator receiver
SCNpilot_cont_1000_p_scaffold_462_curated_23
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16645..18231)
DNA (1587bp) protein (529aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
PAS domain S-box n=1 Tax=Saccharomonospora cyanea NA-134 RepID=H5XR16_9PSEU
signal transduction histidine kinase regulating citrate/malate metabolism
SCNpilot_cont_1000_p_scaffold_462_curated_24
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18329..19678
DNA (1350bp) protein (450aa)
Putative sodium:dicarboxylate symporter n=1 Tax=Actinoplanes friuliensis DSM 7358 RepID=U5VZF1_9ACTO
putative sodium:dicarboxylate symporter
Putative sodium:dicarboxylate symporter {ECO:0000313|EMBL:AGZ42264.1}; TaxID=1246995 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
SCNpilot_cont_1000_p_scaffold_462_curated_25
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19683..20288)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RLQ4_BLASD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCG03780.1}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
SCNpilot_cont_1000_p_scaffold_462_curated_26
Nocardia brasiliensis, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20367..21974)
DNA (1608bp) protein (536aa)
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI00035E76B7
hydrolase CocE/NonD family protein
Hydrolase CocE/NonD family protein {ECO:0000313|EMBL:AFT99479.1}; TaxID=1133849 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia brasiliensis ATCC 700358.;"
SCNpilot_cont_1000_p_scaffold_462_curated_27
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22105..22416
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CWU7_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA23849.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_462_curated_28
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22479..23315
DNA (837bp) protein (279aa)
Alpha/beta hydrolase fold protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CWU6_PSEUX
alpha/beta hydrolase
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:AEA23848.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_462_curated_29
unknown

Not on your lists

comp(24013..24480)
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFEC2E
SCNpilot_cont_1000_p_scaffold_462_curated_30
unknown

Not on your lists

25030..25290
DNA (261bp) protein (87aa)

This feature has no annotations

Displaying items 1-30 of 129 in total

View Taxonomy