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SCNpilot_cont_1000_p_scaffold_1437_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1437_curated_1
Actinotalea fermentans, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..642)
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Amycolatopsis benzoatilytica RepID=UPI000369AFF1
Uncharacterized protein {ECO:0000313|EMBL:KGM16490.1}; Flags: Fragment;; TaxID=862422 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1437_curated_2
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(639..992)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Amycolatopsis benzoatilytica RepID=UPI000369B651
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABK52271.1}; TaxID=351607 species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
SCNpilot_cont_1000_p_scaffold_1437_curated_3
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1088..1591
DNA (504bp) protein (168aa)
Hemerythrin HHE cation binding domain protein n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SNU2_NOCSJ
hemerythrin HHE cation binding domain-containing protein
Hemerythrin HHE cation binding domain protein {ECO:0000313|EMBL:ABL83477.1}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
SCNpilot_cont_1000_p_scaffold_1437_curated_4
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1737..2483)
DNA (747bp) protein (249aa)
SufR family transcriptional regulator n=1 Tax=Rhodococcus opacus M213 RepID=K8XPC0_RHOOP
Regulatory protein ArsR {ECO:0000313|EMBL:EWM19195.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
SufR family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_1437_curated_5
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2998..3894)
DNA (897bp) protein (299aa)
Transcriptional regulator, LysR family n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CQ80_PSEUX
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEA28353.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_1437_curated_6
Mycobacterium lentiflavum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3891..4952)
DNA (1062bp) protein (354aa)
CbbX protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CQ79_PSEUX
ESX-1 secretion system protein EccA1 {ECO:0000313|EMBL:CQD22933.1}; TaxID=141349 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium lentiflavum.;"
CbbX protein
SCNpilot_cont_1000_p_scaffold_1437_curated_7
Mycobacterium sp. DSM 3803, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4956..5381)
DNA (426bp) protein (142aa)
ribulose-bisphosphate carboxylase; K01602 ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39]
Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit-2 n=1 Tax=Mycobacterium sp. DSM 3803 RepID=A8C9T9_9MYCO
Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit-2 {ECO:0000313|EMBL:ABV69590.1}; TaxID=212194 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium sp. (strain DSM 3803 / JC1).;"
SCNpilot_cont_1000_p_scaffold_1437_curated_8
Mycobacterium sp. DSM 3803, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5398..6828)
DNA (1431bp) protein (477aa)
ribulose bisphosphate carboxylase large chain; K01601 ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit-1 n=1 Tax=Mycobacterium sp. DSM 3803 RepID=A8C9T6_9MYCO
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit-1 {ECO:0000313|EMBL:ABV69587.1}; TaxID=212194 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium sp. (strain DSM 3803 / JC1).;"
SCNpilot_cont_1000_p_scaffold_1437_curated_9
Mycobacterium lentiflavum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6994..7998
DNA (1005bp) protein (335aa)
Fructose-bisphosphate aldolase; K01623 fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
Fructose-bisphosphate aldolase n=1 Tax=Mycobacterium tusciae JS617 RepID=H1JX94_9MYCO
Fructose-1,6-bisphosphate aldolase {ECO:0000313|EMBL:CQD22970.1}; TaxID=141349 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium lentiflavum.;"
SCNpilot_cont_1000_p_scaffold_1437_curated_10
Mycobacterium lentiflavum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8187..8873
DNA (687bp) protein (229aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=141349 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium lentiflavum.;"
rpe; ribulose-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1]
Ribulose-phosphate 3-epimerase n=1 Tax=Saccharomonospora marina XMU15 RepID=H5X7J0_9PSEU
SCNpilot_cont_1000_p_scaffold_1437_curated_11
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8870..10915
DNA (2046bp) protein (682aa)
transketolase; K00615 transketolase [EC:2.2.1.1]
Transketolase {ECO:0000313|EMBL:AEA28345.1}; EC=2.2.1.1 {ECO:0000313|EMBL:AEA28345.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Transketolase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CQ72_PSEUX
SCNpilot_cont_1000_p_scaffold_1437_curated_12
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11203..11541
DNA (339bp) protein (113aa)
Hydrogenase expression/synthesis HypA n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CS10_PSEUX
hydrogenase nickel incorporation protein HypA; K04651 hydrogenase nickel incorporation protein HypA/HybF
Hydrogenase expression/synthesis HypA {ECO:0000313|EMBL:AEA28454.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_1437_curated_13
Mycobacterium lentiflavum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11545..12291
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Nocardia sp. BMG111209 RepID=UPI000372800D
Hydrogenase nickel incorporation protein HypB {ECO:0000313|EMBL:CQD22988.1}; TaxID=141349 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium lentiflavum.;"
hydrogenase accessory protein HypB; K04652 hydrogenase nickel incorporation protein HypB
SCNpilot_cont_1000_p_scaffold_1437_curated_14
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12955..14013)
DNA (1059bp) protein (353aa)
Transcriptional regulator, AraC family n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CS11_PSEUX
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:AEA28455.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_1437_curated_15
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14481..15014
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CS12_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA28456.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_1437_curated_16
Mycobacterium aromaticivorans, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15123..16094
DNA (972bp) protein (324aa)
cytochrome-c3 hydrogenase; K06282 hydrogenase small subunit [EC:1.12.99.6]
NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Mycobacterium tusciae JS617 RepID=H1JX87_9MYCO
Hydrogenase {ECO:0000313|EMBL:KDE98119.1}; TaxID=1440774 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium aromaticivorans JS19b1 = JCM 16368.;"
SCNpilot_cont_1000_p_scaffold_1437_curated_17
Mycobacterium cosmeticum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16136..17743
DNA (1608bp) protein (536aa)
cytochrome-c3 hydrogenase; K06281 hydrogenase large subunit [EC:1.12.99.6]
Nickel-dependent hydrogenase large subunit n=1 Tax=Mycobacterium tusciae JS617 RepID=H1JX86_9MYCO
Hydrogen:quinone oxidoreductase {ECO:0000313|EMBL:CDO05862.1}; TaxID=258533 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium cosmeticum.;"
SCNpilot_cont_1000_p_scaffold_1437_curated_18
Mycobacterium lentiflavum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17740..18558
DNA (819bp) protein (273aa)
Hydrogenase maturation protease n=1 Tax=Mycobacterium tusciae JS617 RepID=H1JX85_9MYCO
Hydrogenase maturation protease {ECO:0000313|EMBL:CQD23001.1}; TaxID=141349 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium lentiflavum.;"
hydrogenase maturation protease
SCNpilot_cont_1000_p_scaffold_1437_curated_19
Mycobacterium aromaticivorans, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18555..18764
DNA (210bp) protein (70aa)
Putative uncharacterized protein n=1 Tax=Mycobacterium tusciae JS617 RepID=H1JX84_9MYCO
Uncharacterized protein {ECO:0000313|EMBL:KDE98116.1}; TaxID=1440774 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium aromaticivorans JS19b1 = JCM 16368.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1437_curated_20
Mycobacterium aromaticivorans, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18757..19953
DNA (1197bp) protein (399aa)
TPR repeat-containing protein n=1 Tax=Mycobacterium tusciae JS617 RepID=H1JX83_9MYCO
Uncharacterized protein {ECO:0000313|EMBL:KDE98115.1}; TaxID=1440774 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium aromaticivorans JS19b1 = JCM 16368.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1437_curated_21
Mycobacterium mageritense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19953..20810
DNA (858bp) protein (286aa)
Rieske (2Fe-2S) iron-sulfur domain protein n=1 Tax=Mycobacterium tusciae JS617 RepID=H1JX82_9MYCO
Rieske (2Fe-2S) domain-containing protein {ECO:0000313|EMBL:CDO21123.1}; TaxID=53462 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium mageritense.;"
nitrogen-fixing NifU domain-containing protein
SCNpilot_cont_1000_p_scaffold_1437_curated_22
Mycobacterium rufum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20890..22065
DNA (1176bp) protein (392aa)
NHL repeat containing protein n=1 Tax=Mycobacterium tusciae JS617 RepID=H1JX81_9MYCO
NHL repeat-containing protein {ECO:0000313|EMBL:KGI67835.1}; TaxID=318424 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium rufum.;"
NHL repeat protein
SCNpilot_cont_1000_p_scaffold_1437_curated_23
Mycobacterium xenopi, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22077..22496
DNA (420bp) protein (140aa)
(NiFe) hydrogenase maturation protein HypF n=1 Tax=Mycobacterium tusciae JS617 RepID=H1JX80_9MYCO
Acylphosphatase family protein {ECO:0000313|EMBL:EUA52044.1}; TaxID=1299333 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium xenopi 3993.;"
hydrogenase maturation protein HypF
Displaying 23 items

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