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SCNpilot_cont_1000_p_scaffold_450_curated

Search features with annotation key words

Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_450_curated_1
Thalassospira xiamenensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(627..1508)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2LSN8_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AJD54464.1}; TaxID=1123366 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira xiamenensis M-5 = DSM 17429.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_450_curated_2
unknown

Not on your lists

2278..3138
DNA (861bp) protein (287aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_450_curated_3
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3371..4024)
DNA (654bp) protein (218aa)
Transposase IS111A/IS1328/IS1533 n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CXC1_PSEUX
transposase IS111A/IS1328/IS1533
Transposase IS111A/IS1328/IS1533 {ECO:0000313|EMBL:AEA26495.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_450_curated_4
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4364..4564
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CXC6_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA26500.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_450_curated_5
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4644..5003
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CXC5_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA26499.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_450_curated_6
unknown

Not on your lists

5066..5248
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_450_curated_7
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5245..5880)
DNA (636bp) protein (212aa)
TetR family transcriptional regulator n=1 Tax=Rhodococcus opacus M213 RepID=K8XHR0_RHOOP
TetR family transcriptional regulator {ECO:0000313|EMBL:EKT76635.1}; TaxID=1129896 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus M213.;"
TetR family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_450_curated_8
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6031..6948
DNA (918bp) protein (306aa)
Alcohol dehydrogenase zinc-binding domain-containing protein n=1 Tax=Rhodococcus opacus M213 RepID=K8X772_RHOOP
Zinc-binding oxidoreductase {ECO:0000313|EMBL:EWM18952.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
alcohol dehydrogenase zinc-binding domain-containing protein
SCNpilot_cont_1000_p_scaffold_450_curated_9
unknown

Not on your lists

7810..8133
DNA (324bp) protein (108aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_450_curated_10
Streptomyces roseochromogenus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8133..8633
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Streptomyces roseochromogenes subsp. oscitans DS 12.976 RepID=V6KUI5_STRRC
Uncharacterized protein {ECO:0000313|EMBL:EST35086.1}; TaxID=1352936 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseochromogenus subsp. oscitans DS 12.976.;"
Protein chrB
SCNpilot_cont_1000_p_scaffold_450_curated_11
Streptomyces roseochromogenus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8719..9060
DNA (342bp) protein (114aa)
Chromate resistance protein n=1 Tax=Streptomyces roseochromogenes subsp. oscitans DS 12.976 RepID=V6KSH8_STRRC
Chromate resistance protein {ECO:0000313|EMBL:EST35087.1}; TaxID=1352936 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseochromogenus subsp. oscitans DS 12.976.;"
Protein chrB
SCNpilot_cont_1000_p_scaffold_450_curated_12
Streptomyces roseochromogenus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9101..9448)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Streptomyces roseochromogenes subsp. oscitans DS 12.976 RepID=V6KST2_STRRC
Uncharacterized protein {ECO:0000313|EMBL:EST35088.1}; TaxID=1352936 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseochromogenus subsp. oscitans DS 12.976.;"
SCNpilot_cont_1000_p_scaffold_450_curated_13
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9543..10619
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Amycolatopsis benzoatilytica RepID=UPI00037E7025
Lipoprotein {ECO:0000313|EMBL:EWM18903.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
surface antigen protein
SCNpilot_cont_1000_p_scaffold_450_curated_14
unknown

Not on your lists

comp(10766..10924)
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_450_curated_15
Streptomyces gancidicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10998..11390)
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Streptomyces sp. FxanaD5 RepID=UPI00036019BF
Uncharacterized protein {ECO:0000313|EMBL:EMF20451.1}; TaxID=1284664 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces gancidicus BKS 13-15.;"
SC6D11.22c; hypothetical protein
SCNpilot_cont_1000_p_scaffold_450_curated_16
Streptomyces cattleya, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11430..11843)
DNA (414bp) protein (138aa)
Putative membrane protein n=1 Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=F8JJ09_STREN
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCB72055.1}; Uncharacterized protein {ECO:0000313|EMBL:AEW98898.1}; TaxID=1003195 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC; 14057 / NRRL 8057).;"
SCNpilot_cont_1000_p_scaffold_450_curated_17
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11840..13021)
DNA (1182bp) protein (394aa)
Major facilitator superfamily MFS_1 n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CW47_PSEUX
major facilitator superfamily protein; K02575 MFS transporter, NNP family, nitrate/nitrite transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEA26461.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_450_curated_18
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13288..16995
DNA (3708bp) protein (1236aa)
Nitrate reductase, alpha subunit {ECO:0000313|EMBL:AEA26462.1}; EC=1.7.99.4 {ECO:0000313|EMBL:AEA26462.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
nitrate reductase subunit alpha; K00370 nitrate reductase 1, alpha subunit [EC:1.7.99.4]
Nitrate reductase, alpha subunit n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CW48_PSEUX
SCNpilot_cont_1000_p_scaffold_450_curated_19
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16995..18656
DNA (1662bp) protein (554aa)
nitrate reductase subunit beta; K00371 nitrate reductase 1, beta subunit [EC:1.7.99.4]
Nitrate reductase, beta subunit {ECO:0000313|EMBL:AEA26463.1}; EC=1.7.99.4 {ECO:0000313|EMBL:AEA26463.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Nitrate reductase, beta subunit n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CW49_PSEUX
SCNpilot_cont_1000_p_scaffold_450_curated_20
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18653..19297
DNA (645bp) protein (215aa)
Nitrate reductase molybdenum cofactor assembly chaperone n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CW50_PSEUX
nitrate reductase molybdenum cofactor assembly chaperone; K00373 nitrate reductase 1, delta subunit
Nitrate reductase molybdenum cofactor assembly chaperone {ECO:0000313|EMBL:AEA26464.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_450_curated_21
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19294..20022
DNA (729bp) protein (243aa)
respiratory nitrate reductase subunit gamma; K00374 nitrate reductase 1, gamma subunit [EC:1.7.99.4]
Respiratory nitrate reductase, gamma subunit {ECO:0000313|EMBL:AEA26465.1}; EC=1.7.99.4 {ECO:0000313|EMBL:AEA26465.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Respiratory nitrate reductase, gamma subunit n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CW51_PSEUX
SCNpilot_cont_1000_p_scaffold_450_curated_22
Streptomyces coelicoflavus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20019..20372
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Streptomyces coelicoflavus ZG0656 RepID=H1QGS4_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EHN76337.1}; TaxID=1120227 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces coelicoflavus ZG0656.;"
SCD31.14; hypothetical protein
SCNpilot_cont_1000_p_scaffold_450_curated_23
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20438..20926)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI00037EE5D5
Pyridoxamine 5'-phosphate oxidase-like FMN-binding protein {ECO:0000313|EMBL:AIJ22818.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
SCNpilot_cont_1000_p_scaffold_450_curated_24
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21074..21739)
DNA (666bp) protein (222aa)
putative methyltransferase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFEEBB
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:EXG82289.1}; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
methyltransferase
SCNpilot_cont_1000_p_scaffold_450_curated_25
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21765..23117)
DNA (1353bp) protein (451aa)
Transporter, major facilitator family protein n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RS46_LEIAQ
Transporter, major facilitator family protein {ECO:0000313|EMBL:ERK71661.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
transport protein
SCNpilot_cont_1000_p_scaffold_450_curated_26
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23209..24174)
DNA (966bp) protein (322aa)
Helix-turn-helix type 11 domain-containing protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CR46_PSEUX
helix-turn-helix type 11 domain-containing protein
Helix-turn-helix type 11 domain-containing protein {ECO:0000313|EMBL:AEA24483.1}; Flags: Precursor;; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_450_curated_27
Mycobacterium lentiflavum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24238..24636
DNA (399bp) protein (133aa)
Glyoxalase family protein n=4 Tax=Mycobacterium avium complex (MAC) RepID=H8IVI6_MYCIA
Glyoxalase {ECO:0000313|EMBL:CQD19758.1}; TaxID=141349 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium lentiflavum.;"
glyoxalase family protein
SCNpilot_cont_1000_p_scaffold_450_curated_28
Kineococcus radiotolerans, Kineococcus, Kineosporiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24639..24974)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Nocardiopsis potens RepID=UPI0003496373
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold {ECO:0000313|EMBL:ABS01827.1}; TaxID=266940 species="Bacteria; Actinobacteria; Kineosporiales; Kineosporiaceae; Kineococcus.;" source="Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 /; SRS30216).;"
SCNpilot_cont_1000_p_scaffold_450_curated_29
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25004..25861)
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Nocardia sp. BMG111209 RepID=UPI000360F94A
Uncharacterized protein {ECO:0000313|EMBL:EWM18891.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_450_curated_30
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25875..26924)
DNA (1050bp) protein (350aa)
S-(Hydroxymethyl)glutathione dehydrogenase {ECO:0000313|EMBL:AEA22562.1}; EC=1.1.1.284 {ECO:0000313|EMBL:AEA22562.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
S-(Hydroxymethyl)glutathione dehydrogenase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CNV0_PSEUX
S-(hydroxymethyl)glutathione dehydrogenase
Displaying items 1-30 of 69 in total

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