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SCNpilot_cont_1000_p_scaffold_231_curated_11

Organism: scnpilot_dereplicated_Pseudonocardia_1

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 14 / 38 MC: 1
Location: comp(6918..7514)

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase ECF-type sigma factor n=1 Tax=Nocardia asteroides NBRC 15531 RepID=U5E5W9_NOCAS similarity UNIREF
DB: UNIREF100
  • Identity: 42.9
  • Coverage: 175.0
  • Bit_score: 124
  • Evalue 8.90e-26
ECF family sigma-70 type sigma factor {ECO:0000313|EMBL:GAM45325.1}; TaxID=37332 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia seriolae.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 42.0
  • Coverage: 176.0
  • Bit_score: 130
  • Evalue 3.00e-27
sigU; putative RNA polymerase ECF subfamily sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 42.6
  • Coverage: 176.0
  • Bit_score: 119
  • Evalue 9.00e-25

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Taxonomy

Nocardia seriolae → Nocardia → Corynebacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 597
ATGAGCACCGCGGTCCACCCCACCCGCACGACCCCGTGCGGCACACCGTGCGCGGGCCTCTGCACCCCGCAGGGCTTCGCGTCCGCCTACCGCGAGCACCGGCCCCGGCTGCTGGCGCGGGCCCGCGGCCTGCTCGACGACCCGCAGCTGGCCGAGGACGTCGTGCAGGAGGTCCTCACCAGGGCCTGGACGGCGTGCTCCTCGTTCGACCCGGCGGCCGGGCCCCCGGTCTCGGCGTGGCTGGCGACGATCACCCGCCGCGTCGTGATCGACCAGGCCCGGGCGCGGGCCGTGCGTCCCGGGCTGCACCCCGCCGCGGCGGATGACCGGGCCGCCGACCGGGTCACCCCGGACGCGGCGGACACCGTCGTCACCCGCGTGGACCTGCTGGAGGCCCTGTCGGGGATGACCACCGCGCACCGGGCCGTGCTCGTCGGTGCGGTGGTGCGCGACCGGCCCCACGCGGACCTCGCCGCCGAGCTGCACGTCCCGGTGGGGACGGTCAAGAGCCGGGTCCACCACGCCCTGCGCGGCATGCGCACCCACCTGACGGCGCCGGGCCCCGGCACCGTCCCGGCCTATCGGAGGACCCGATGA
PROTEIN sequence
Length: 199
MSTAVHPTRTTPCGTPCAGLCTPQGFASAYREHRPRLLARARGLLDDPQLAEDVVQEVLTRAWTACSSFDPAAGPPVSAWLATITRRVVIDQARARAVRPGLHPAAADDRAADRVTPDAADTVVTRVDLLEALSGMTTAHRAVLVGAVVRDRPHADLAAELHVPVGTVKSRVHHALRGMRTHLTAPGPGTVPAYRRTR*