ggKbase home page

SCNpilot_cont_300_bf_scaffold_9_curated

Search features with annotation key words

Displaying items 1-30 of 456 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_9_curated_1
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..87)
DNA (87bp) protein (29aa)
elongation factor Tu n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DB07F6
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
elongation factor Tu
SCNpilot_cont_300_bf_scaffold_9_curated_2
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

255..1478
DNA (1224bp) protein (408aa)
Beta-lactamase n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QC17_RHOPT
beta-lactamase
Uncharacterized protein {ECO:0000313|EMBL:KGJ70996.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
SCNpilot_cont_300_bf_scaffold_9_curated_3
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1501..1866
DNA (366bp) protein (122aa)
Glutathione-dependent formaldehyde-activating, GFA n=1 Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) RepID=B2J7M1_NOSP7
Aldehyde-activating protein {ECO:0000313|EMBL:ETR77343.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
glutathione-dependent formaldehyde-activating protein
SCNpilot_cont_300_bf_scaffold_9_curated_4
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2149..2568
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GXQ8_PUSST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEC21489.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
SCNpilot_cont_300_bf_scaffold_9_curated_5
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2654..3703
DNA (1050bp) protein (350aa)
NMT1/THI5-like family protein 1 n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0F002_9BURK
NMT1/THI5-like protein {ECO:0000313|EMBL:KCV60127.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
ABC transporter substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_9_curated_6
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3797..4600
DNA (804bp) protein (268aa)
ABC transporter, ATP-binding protein n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KTL8_BORA1
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGE01740.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
ABC transporter ATP-binding protein; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_9_curated_7
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4600..5469
DNA (870bp) protein (290aa)
Putative type IV conjugative transfer system protein TraL n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4X5M4_9BURK
Putative type IV conjugative transfer system protein TraL {ECO:0000313|EMBL:EFF77985.1}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii ATCC 43553.;"
ABC transporter, permease component
SCNpilot_cont_300_bf_scaffold_9_curated_8
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5616..6572)
DNA (957bp) protein (319aa)
Transcriptional regulatory protein LysR family n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GG14_9BRAD
transcriptional regulatory protein LysR family
Transcriptional regulatory protein LysR family {ECO:0000313|EMBL:BAL79701.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_cont_300_bf_scaffold_9_curated_9
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6759..7526)
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PHG5_9BRAD
oxidoreductase
Short-chain dehydrogenase {ECO:0000313|EMBL:KGT75650.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
SCNpilot_cont_300_bf_scaffold_9_curated_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7598..8341)
DNA (744bp) protein (248aa)
Phosphoglycerate mutase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q211B7_RHOPB
phosphoglycerate mutase
Phosphoglycerate mutase {ECO:0000313|EMBL:ABD89019.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_300_bf_scaffold_9_curated_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8510..9295
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PAG2_9BRAD
Oxidoreductase {ECO:0000313|EMBL:KIZ47263.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
short-chain dehydrogenase/reductase SDR family protein
SCNpilot_cont_300_bf_scaffold_9_curated_12
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9315..10289)
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003683BF2
Bradyrhizobium elkanii strain UASWS1015 Contig169, whole genome shotgun sequence {ECO:0000313|EMBL:KIU50563.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_9_curated_13
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10389..11450)
DNA (1062bp) protein (354aa)
Bll5454 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89J30_BRADU
hypothetical protein; K06979 rbh
Uncharacterized protein {ECO:0000313|EMBL:KGJ71006.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
SCNpilot_cont_300_bf_scaffold_9_curated_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11499..12734)
DNA (1236bp) protein (412aa)
Acyl-CoA dehydrogenase-like n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q134Q4_RHOPS
acyl-CoA dehydrogenase-like protein
Acyl-CoA dehydrogenase-like {ECO:0000313|EMBL:ABE40435.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_300_bf_scaffold_9_curated_15
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12973..13668
DNA (696bp) protein (232aa)
Transcriptional regulatory protein TetR family n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G5M3_9BRAD
transcriptional regulatory protein TetR family
Transcriptional regulatory protein TetR family {ECO:0000313|EMBL:BAL76060.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_cont_300_bf_scaffold_9_curated_16
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13689..13925)
DNA (237bp) protein (79aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YEZ2_9BRAD
Putative uncharacterized protein {ECO:0000313|EMBL:EHR01453.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
SCNpilot_cont_300_bf_scaffold_9_curated_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14139..14378)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJ34_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63763.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_9_curated_18
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14760..15002)
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037556E4
Uncharacterized protein {ECO:0000313|EMBL:KGJ70207.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_9_curated_19
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15228..16724
DNA (1497bp) protein (499aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] rbh
Aldehyde dehydrogenase (NAD+) n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IFE3_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig174, whole genome shotgun sequence {ECO:0000313|EMBL:KIU49290.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_cont_300_bf_scaffold_9_curated_20
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17206..17829
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YW01_BRASO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCD87954.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
SCNpilot_cont_300_bf_scaffold_9_curated_21
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18250..19077
DNA (828bp) protein (276aa)
RNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
RNA methyltransferase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037C0F96
RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:ABJ07612.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_300_bf_scaffold_9_curated_22
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19177..19605)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKF4_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63293.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_9_curated_23
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19637..20098)
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000367BD14
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD88644.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_300_bf_scaffold_9_curated_24
unknown

Not on your lists

20336..20587
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_9_curated_25
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20924..21157
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TFW6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KIZ47422.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_9_curated_26
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21251..21961)
DNA (711bp) protein (237aa)
OmpA-like transmembrane region n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMR4_NITHX
OmpA-like transmembrane region
OmpA-like transmembrane region {ECO:0000313|EMBL:ABE62483.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_9_curated_27
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22234..23424
DNA (1191bp) protein (397aa)
beta-lactamase n=1 Tax=Afipia birgiae RepID=UPI0002F0E8BE
Uncharacterized protein {ECO:0000313|EMBL:EKS36095.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_9_curated_28
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23429..23905)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PBR7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39016.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
tryptophan-rich sensory protein; K07185 tryptophan-rich sensory protein
SCNpilot_cont_300_bf_scaffold_9_curated_29
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24042..24293)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IQZ0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ35945.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_300_bf_scaffold_9_curated_30
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24583..25140
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002D8B984
Bradyrhizobium elkanii strain UASWS1015 Contig187, whole genome shotgun sequence {ECO:0000313|EMBL:KIU43384.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
Displaying items 1-30 of 456 in total

View Taxonomy