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SCNpilot_cont_300_bf_scaffold_192_curated

Search features with annotation key words

Displaying items 1-30 of 193 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_192_curated_1
unknown

Not on your lists

comp(1..87)
DNA (87bp) protein (29aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_192_curated_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(391..1104)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PGC9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41687.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ABC-type branched-chain amino acid transport systems, ATPase component
SCNpilot_cont_300_bf_scaffold_192_curated_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1088..1897)
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJG5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41686.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ABC-type branched-chain amino acid transport systems, ATPase component
SCNpilot_cont_300_bf_scaffold_192_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1894..2928)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PQ83_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41685.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_cont_300_bf_scaffold_192_curated_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2925..3797)
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PLM8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41684.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
SCNpilot_cont_300_bf_scaffold_192_curated_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3887..5050)
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PTJ4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41683.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ABC transporter substrate-binding protein rbh
SCNpilot_cont_300_bf_scaffold_192_curated_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5519..7003)
DNA (1485bp) protein (495aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PTI9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41678.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
pyridoxal-5'-phosphate-dependent protein subunit beta
SCNpilot_cont_300_bf_scaffold_192_curated_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7079..9508)
DNA (2430bp) protein (810aa)
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase; K11779 FO synthase [EC:2.5.1.-]
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PGB5_9BRAD
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit {ECO:0000313|EMBL:EKS41677.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_cont_300_bf_scaffold_192_curated_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9510..10217)
DNA (708bp) protein (236aa)
2-phospho-L-lactate guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_02114}; Short=LP guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_02114};; EC=2.7.7.68 {ECO:0000256|HAMAP-Rule:MF_02114};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
2-phospho-L-lactate guanylyltransferase CofC; K14941 2-phospho-L-lactate guanylyltransferase [EC:2.7.7.68]
2-phospho-L-lactate guanylyltransferase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJF5_9BRAD
SCNpilot_cont_300_bf_scaffold_192_curated_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10230..11198)
DNA (969bp) protein (323aa)
LPPG domain-containing protein containing protein; K11212 LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28]
LPPG:FO 2-phospho-L-lactate transferase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PQ74_9BRAD
LPPG:FO 2-phospho-L-lactate transferase {ECO:0000313|EMBL:EKS41675.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_cont_300_bf_scaffold_192_curated_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11195..11962)
DNA (768bp) protein (256aa)
F420-dependent oxidoreductase; K12234 coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34]
Gamma-glutamyl ligase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PLL8_9BRAD
Gamma-glutamyl ligase {ECO:0000313|EMBL:EKS41674.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_cont_300_bf_scaffold_192_curated_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11971..12630)
DNA (660bp) protein (220aa)
NADPH-dependent F420 reductase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PTI2_9BRAD
NADPH-dependent F420 reductase {ECO:0000313|EMBL:EKS41673.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
NADPH-dependent F420 reductase; K06988
SCNpilot_cont_300_bf_scaffold_192_curated_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12657..13433)
DNA (777bp) protein (259aa)
UPF0271 protein HMPREF9695_00764 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PGA9_9BRAD
UPF0271 protein HMPREF9695_00764 {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
LamB/YcsF family protein; K07160 UPF0271 protein
SCNpilot_cont_300_bf_scaffold_192_curated_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13684..14559)
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PTH4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41668.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_192_curated_15
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14813..16006
DNA (1194bp) protein (398aa)
diaminopropionate ammonia-lyase family (EC:4.3.1.15)
Diaminopropionate ammonia-lyase {ECO:0000313|EMBL:EHK80036.1}; EC=4.3.1.15 {ECO:0000313|EMBL:EHK80036.1};; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
Diaminopropionate ammonia-lyase family n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4IH53_RHIML
SCNpilot_cont_300_bf_scaffold_192_curated_16
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16115..16897)
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJ81_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig184, whole genome shotgun sequence {ECO:0000313|EMBL:KIU45510.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
Transcriptional regulator
SCNpilot_cont_300_bf_scaffold_192_curated_17
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16983..18197)
DNA (1215bp) protein (405aa)
Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein (EC:1.2.99.2)
(2Fe-2S)-binding domain-containing protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LSZ5_9RHIZ
(2Fe-2S)-binding domain-containing protein {ECO:0000313|EMBL:EKF20904.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_cont_300_bf_scaffold_192_curated_18
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18200..19033)
DNA (834bp) protein (278aa)
Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein (EC:1.2.99.2)
carbon monoxide dehydrogenase n=1 Tax=Kaistia granuli RepID=UPI00036D74A9
Carbon monoxide dehydrogenase {ECO:0000313|EMBL:EKF20903.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_cont_300_bf_scaffold_192_curated_19
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19320..20597)
DNA (1278bp) protein (426aa)
acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase (EC:3.5.1.16)
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4ILB5_RHIML
Bradyrhizobium elkanii strain UASWS1015 Contig184, whole genome shotgun sequence {ECO:0000313|EMBL:KIU45506.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_cont_300_bf_scaffold_192_curated_20
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20673..21626)
DNA (954bp) protein (318aa)
Luciferase-like, subgroup n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A1R9_STAND
luciferase-like protein
Luciferase-like, subgroup {ECO:0000313|EMBL:ADH91494.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_300_bf_scaffold_192_curated_21
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21652..22422)
DNA (771bp) protein (257aa)
Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit (EC:2.8.3.12)
3-oxoadipate:succinyl-CoA transferase subunit B n=1 Tax=Kaistia granuli RepID=UPI000362D8A6
Bradyrhizobium elkanii strain UASWS1015 Contig184, whole genome shotgun sequence {ECO:0000313|EMBL:KIU45504.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_cont_300_bf_scaffold_192_curated_22
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22415..23380)
DNA (966bp) protein (322aa)
Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit (EC:2.8.3.12)
CoA synthetase n=1 Tax=Rhizobium meliloti RepID=UPI0002ECFD5F
Glutaconate CoA-transferase {ECO:0000313|EMBL:EHK80025.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
SCNpilot_cont_300_bf_scaffold_192_curated_23
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23995..25248)
DNA (1254bp) protein (418aa)
D-amino acid dehydrogenase small subunit; K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
D-amino acid dehydrogenase {ECO:0000255|HAMAP-Rule:MF_01202}; EC=1.4.99.1 {ECO:0000255|HAMAP-Rule:MF_01202};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
D-amino acid dehydrogenase small subunit n=1 Tax=Afipia birgiae RepID=UPI000376F5DC
SCNpilot_cont_300_bf_scaffold_192_curated_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25245..26393)
DNA (1149bp) protein (383aa)
alanine racemase; K01775 alanine racemase [EC:5.1.1.1]
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00030579A2
SCNpilot_cont_300_bf_scaffold_192_curated_25
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26565..27041
DNA (477bp) protein (159aa)
AsnC family transcriptional regulator n=1 Tax=Afipia birgiae RepID=UPI0002DDE99F
AsnC family transcriptional regulator
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ABD06211.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_300_bf_scaffold_192_curated_26
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27073..29535)
DNA (2463bp) protein (821aa)
FO synthase FbiC {ECO:0000313|EMBL:AEI07642.1}; EC=2.5.1.- {ECO:0000313|EMBL:AEI07642.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
fbiC; FO synthase FbiC (EC:2.5.1.-); K11779 FO synthase [EC:2.5.1.-]
FO synthase n=1 Tax=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) RepID=B6JBS6_OLICO
SCNpilot_cont_300_bf_scaffold_192_curated_27
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29532..30263)
DNA (732bp) protein (244aa)
hypothetical protein; K14941 2-phospho-L-lactate guanylyltransferase [EC:2.7.7.68]
2-phospho-L-lactate guanylyltransferase {ECO:0000255|HAMAP-Rule:MF_02114}; Short=LP guanylyltransferase {ECO:0000255|HAMAP-Rule:MF_02114};; EC=2.7.7.68 {ECO:0000255|HAMAP-Rule:MF_02114};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
2-phospho-L-lactate guanylyltransferase n=1 Tax=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) RepID=COFC_OLICO
SCNpilot_cont_300_bf_scaffold_192_curated_28
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(30367..31389)
DNA (1023bp) protein (341aa)
5,10-methylenetetrahydromethanopterin reductase; K00320 coenzyme F420-dependent N5,N10-methenyltetrahydromethanopterin reductase [EC:1.5.99.11] id=14630913 bin=bin9_gal15 species=Methanotorris igneus genus=Methanotorris taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=bin9_gal15 organism_group=GAL15
methylenetetrahydromethanopterin reductase; K00320 coenzyme F420-dependent N5,N10-methenyltetrahydromethanopterin reductase [EC:1.5.99.11]
Tax=CSP1_3_Armatimonadetes
SCNpilot_cont_300_bf_scaffold_192_curated_29
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31412..32026)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AYT8_AZOBR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCD03097.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCNpilot_cont_300_bf_scaffold_192_curated_30
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32039..32512)
DNA (474bp) protein (158aa)
carbon monoxide dehydrogenase; K03518 carbon-monoxide dehydrogenase small subunit [EC:1.2.99.2]
carbon monoxide dehydrogenase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036F76C9
Putative carbon monoxide dehydrogenase small chain {ECO:0000313|EMBL:KGJ68893.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
Displaying items 1-30 of 193 in total

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