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SCNpilot_cont_300_bf_scaffold_1003_curated

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1003_curated_1
unknown

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1..99
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1003_curated_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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912..3014
DNA (2103bp) protein (701aa)
Peptidase M23B n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20YI7_RHOPB
peptidase M23B
Peptidase M23B {ECO:0000313|EMBL:ABD89799.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_300_bf_scaffold_1003_curated_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3088..5727)
DNA (2640bp) protein (880aa)
Chaperone protein ClpB n=2 Tax=Rhodopseudomonas palustris RepID=CLPB_RHOPA rbh
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ATP-dependent chaperone ClpB; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB
SCNpilot_cont_300_bf_scaffold_1003_curated_4
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6043..6735)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQD1_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGP08844.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_cont_300_bf_scaffold_1003_curated_5
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6955..7623)
DNA (669bp) protein (223aa)
Methionine biosynthesis MetW n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQD2_NITHX
methionine biosynthesis MetW
Methionine biosynthesis MetW {ECO:0000313|EMBL:ABE61565.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1003_curated_6
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7625..8827)
DNA (1203bp) protein (401aa)
metX; homoserine O-acetyltransferase (EC:2.3.1.31); K00641 homoserine O-acetyltransferase [EC:2.3.1.31]
Homoserine O-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070949}; EC=2.3.1.31 {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070942};; Homoserine O-trans-acetylase {ECO:0000256|HAMAP-Rule:MF_00296}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
Homoserine O-acetyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=METX_NITHX rbh
SCNpilot_cont_300_bf_scaffold_1003_curated_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9171..10025
DNA (855bp) protein (285aa)
Chorismate mutase n=2 Tax=Rhodopseudomonas palustris RepID=Q6N1G7_RHOPA
aro; hypothetical protein rbh
Chorismate mutase {ECO:0000313|EMBL:CAE29879.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_cont_300_bf_scaffold_1003_curated_8
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10052..11149
DNA (1098bp) protein (366aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
histidinol-phosphate aminotransferase (EC:2.6.1.9); K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9]
histidinol-phosphate aminotransferase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000379FE57
SCNpilot_cont_300_bf_scaffold_1003_curated_9
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11146..12084
DNA (939bp) protein (313aa)
cyclohexadienyl dehydrogenase; K00220 cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12]
cyclohexadienyl dehydrogenase n=1 Tax=Afipia birgiae RepID=UPI00031BABA0
Cyclohexadieny/prephenate dehydrogenase {ECO:0000313|EMBL:ERF81716.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
SCNpilot_cont_300_bf_scaffold_1003_curated_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12186..13379)
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQD7_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61560.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1003_curated_11
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13392..14093
DNA (702bp) protein (234aa)
ChaC-like protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SV44_NITWN
Gamma-glutamyl cyclotransferase {ECO:0000313|EMBL:KJC47128.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
ChaC-like protein; K07232 cation transport protein ChaC
SCNpilot_cont_300_bf_scaffold_1003_curated_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14097..14870)
DNA (774bp) protein (258aa)
phospholipid/glycerol acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
Phospholipid/glycerol acyltransferase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20WV0_RHOPB
Acyl-phosphate glycerol 3-phosphate acyltransferase {ECO:0000313|EMBL:KIZ39099.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_300_bf_scaffold_1003_curated_13
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14882..15613)
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037C1F14
Uncharacterized protein {ECO:0000313|EMBL:KJC56477.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1003_curated_14
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15719..16630)
DNA (912bp) protein (304aa)
Cell division protein n=2 Tax=Bradyrhizobium RepID=H5YR76_9BRAD
Cell division protein FtsX {ECO:0000313|EMBL:KJC56476.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
FtsX; cell division protein; K09811 cell division transport system permease protein rbh
SCNpilot_cont_300_bf_scaffold_1003_curated_15
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16683..17342)
DNA (660bp) protein (220aa)
Cell division ATP-binding protein FtsE n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IGU1_9BRAD
ABC transporter; K09812 cell division transport system ATP-binding protein
Cell division ATP-binding protein FtsE {ECO:0000313|EMBL:ERF81704.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
SCNpilot_cont_300_bf_scaffold_1003_curated_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17519..18358
DNA (840bp) protein (280aa)
Zinc finger/thioredoxin putative n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20WU6_RHOPB
Zinc finger/thioredoxin putative
Zinc finger/thioredoxin putative {ECO:0000313|EMBL:ABD90390.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_300_bf_scaffold_1003_curated_17
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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18410..18790
DNA (381bp) protein (127aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2WKZ9_9BRAD
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:EJN13300.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
two-component response regulator
SCNpilot_cont_300_bf_scaffold_1003_curated_18
unknown

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comp(18667..18906)
DNA (240bp) protein (80aa)

This feature has no annotations

Displaying 18 items

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