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SCNpilot_cont_300_bf_scaffold_6_curated

Search features with annotation key words

Displaying items 31-60 of 1278 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_6_curated_31
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39052..42021)
DNA (2970bp) protein (990aa)
lactate dehydrogenase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036C71DA
Uncharacterized protein {ECO:0000313|EMBL:ERF85484.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
glycolate oxidase; K06911 rbh
SCNpilot_cont_300_bf_scaffold_6_curated_32
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42024..42761)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6U0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36469.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_6_curated_33
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42953..44158
DNA (1206bp) protein (402aa)
SgaA serine-glyoxylate aminotransferase; K00830 alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] rbh
serine--glyoxylate aminotransferase n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003725F64
Bll6037 protein {ECO:0000313|EMBL:BAC51302.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCNpilot_cont_300_bf_scaffold_6_curated_34
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44244..45041
DNA (798bp) protein (266aa)
enoyl-CoA hydratase (EC:4.2.1.17) rbh
enoyl-CoA hydratase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI000376FAF8
Bll6036 protein {ECO:0000313|EMBL:BAC51301.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCNpilot_cont_300_bf_scaffold_6_curated_35
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45135..46121
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P1J4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36467.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
SCNpilot_cont_300_bf_scaffold_6_curated_36
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46246..46785
DNA (540bp) protein (180aa)
Monofunctional biosynthetic peptidoglycan transglycosylase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HKZ6_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig157, whole genome shotgun sequence {ECO:0000313|EMBL:KIU52566.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_6_curated_37
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46808..48319
DNA (1512bp) protein (504aa)
Flagellar biosynthesis protein FlhA n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IRR8_9BRAD
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:ERF85494.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_6_curated_38
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48323..49513)
DNA (1191bp) protein (397aa)
PhnB protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1INK7_9BRAD
PhnB protein {ECO:0000313|EMBL:ERF85495.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_6_curated_39
Halomonas anticariensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49744..50775
DNA (1032bp) protein (344aa)
dTDP-glucose 4,6-dehydratase; K08679 UDP-glucuronate 4-epimerase [EC:5.1.3.6]
NAD dependent epimerase/dehydratase n=1 Tax=Amorphus coralli RepID=UPI0003739818
NAD dependent epimerase/dehydratase {ECO:0000313|EMBL:EPC04092.1}; TaxID=1121939 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas anticariensis FP35 = DSM 16096.;"
SCNpilot_cont_300_bf_scaffold_6_curated_40
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50803..52119)
DNA (1317bp) protein (439aa)
ugdH; UDP-glucose 6-dehydrogenase; K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22] rbh
UDP-glucose 6-dehydrogenase n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89BL9_BRADU
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:BAR57816.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
SCNpilot_cont_300_bf_scaffold_6_curated_41
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52501..53064
DNA (564bp) protein (188aa)
rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13); K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000372542C
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:EIG62326.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
SCNpilot_cont_300_bf_scaffold_6_curated_42
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53076..54128
DNA (1053bp) protein (351aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
rfbB; dTDP-glucose 4,6-dehydratase (EC:4.2.1.46); K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
dTDP-glucose 4,6-dehydratase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037A2CDE
SCNpilot_cont_300_bf_scaffold_6_curated_43
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54136..55038
DNA (903bp) protein (301aa)
rfbD; TDP-rhamnose synthetase, NAD(P)-binding (EC:1.1.1.133); K00067 dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
dTDP-4-dehydrorhamnose reductase n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003791AD5
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:EIG62328.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
SCNpilot_cont_300_bf_scaffold_6_curated_44
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55035..55904
DNA (870bp) protein (290aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
rfbA; glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24); K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QRC3_9BRAD
SCNpilot_cont_300_bf_scaffold_6_curated_45
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56536..58242
DNA (1707bp) protein (569aa)
Uncharacterized protein {ECO:0000313|EMBL:KJS15112.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
SCNpilot_cont_300_bf_scaffold_6_curated_46
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58371..59366
DNA (996bp) protein (332aa)
Glycosyl transferase n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2WJJ2_9BRAD
Glycosyl transferase {ECO:0000313|EMBL:KJS15109.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
glycosyl transferase
SCNpilot_cont_300_bf_scaffold_6_curated_47
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

59371..61242
DNA (1872bp) protein (624aa)
Asparagine synthase, glutamine-hydrolyzing; K01953 asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
Asparagine synthetase n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3CU78_9BRAD
Asparagine synthase {ECO:0000313|EMBL:KJS15108.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
SCNpilot_cont_300_bf_scaffold_6_curated_48
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61244..62002
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Omnitrophica bacterium SCGC AAA257-O07 RepID=UPI0003B658BC
Uncharacterized protein {ECO:0000313|EMBL:KJS15107.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_6_curated_49
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62216..62995
DNA (780bp) protein (260aa)
Uncharacterized protein {ECO:0000313|EMBL:KJS15105.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
methyltransferase type 11 id=2881704 bin=GWF2_OP3_43_52 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
SCNpilot_cont_300_bf_scaffold_6_curated_50
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62976..63425
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI0003639C6A
Uncharacterized protein {ECO:0000313|EMBL:KJS15104.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
SCNpilot_cont_300_bf_scaffold_6_curated_51
Pseudomonas sp. SHC52, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

63634..65481
DNA (1848bp) protein (616aa)
Uncharacterized protein n=8 Tax=Pseudomonas aeruginosa RepID=U8JVT1_PSEAI
O-antigen acetylase {ECO:0000313|EMBL:CDF96007.1}; TaxID=984195 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. SHC52.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_6_curated_52
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65588..67405
DNA (1818bp) protein (606aa)
Uncharacterized protein {ECO:0000313|EMBL:AHY53043.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
SCNpilot_cont_300_bf_scaffold_6_curated_53
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67707..69431
DNA (1725bp) protein (575aa)
Putative glucosyll transferase group 1 {ECO:0000313|EMBL:AHY53040.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
Putative glycosyltransferase id=3222280 bin=GWF2_Verrucomicrobia_51_19 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Verrucomicrobia_51_19 organism_group=Verrucomicrobia organism_desc=Good +
group 1 glycosyl transferase
SCNpilot_cont_300_bf_scaffold_6_curated_54
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69468..71513
DNA (2046bp) protein (682aa)
asparagine synthase; K01953 asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
Asparagine synthase (Glutamine-hydrolyzing) {ECO:0000313|EMBL:AHY53039.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
asparagine synthase id=3222266 bin=GWF2_Verrucomicrobia_51_19 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Verrucomicrobia_51_19 organism_group=Verrucomicrobia organism_desc=Good +
SCNpilot_cont_300_bf_scaffold_6_curated_55
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71500..73527
DNA (2028bp) protein (676aa)
Uncharacterized protein {ECO:0000313|EMBL:AHY53038.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
Putative uncharacterized protein id=3222271 bin=GWF2_Verrucomicrobia_51_19 species=Fusobacterium nucleatum genus=Fusobacterium taxon_order=Fusobacteriales taxon_class=Fusobacteriia phylum=Fusobacteria tax=GWF2_Verrucomicrobia_51_19 organism_group=Verrucomicrobia organism_desc=Good +
hypothetical protein
SCNpilot_cont_300_bf_scaffold_6_curated_56
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

73515..74771
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-133-G06 RepID=UPI0003800F8B
Uncharacterized protein {ECO:0000313|EMBL:AHY53037.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
polysaccharide biosynthesis protein
SCNpilot_cont_300_bf_scaffold_6_curated_57
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74952..75506
DNA (555bp) protein (185aa)
Uncharacterized protein {ECO:0000313|EMBL:AHY53036.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
Methylase involved in ubiquinone/menaquinone biosynthesis id=3805190 bin=GWF2_Verrucomicrobia_51_19 species=Saccharomonospora marina genus=Saccharomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Verrucomicrobia_51_19 organism_group=Verrucomicrobia organism_desc=Good +
hypothetical protein
SCNpilot_cont_300_bf_scaffold_6_curated_58
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

75558..76424
DNA (867bp) protein (289aa)
Putative nucleoside-diphosphate sugar epimerase n=1 Tax=Polaromonas sp. CF318 RepID=J3DGU9_9BURK
Putative nucleoside-diphosphate sugar epimerase {ECO:0000313|EMBL:EJL91694.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
NAD-dependent epimerase/dehydratase
SCNpilot_cont_300_bf_scaffold_6_curated_59
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(76455..77822)
DNA (1368bp) protein (456aa)
Uncharacterized protein n=1 Tax=Pseudomonas putida TRO1 RepID=N9U8K2_PSEPU
Uncharacterized protein {ECO:0000313|EMBL:ENY74780.1}; TaxID=1227924 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida TRO1.;"
SCNpilot_cont_300_bf_scaffold_6_curated_60
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(77845..78660)
DNA (816bp) protein (272aa)
Putative methyltransferase n=1 Tax=planctomycete KSU-1 RepID=I3IPG3_9PLAN
Type 11 methyltransferase {ECO:0000313|EMBL:GAK45072.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
type 11 methyltransferase
Displaying items 31-60 of 1278 in total

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