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SCNpilot_cont_300_bf_scaffold_6_curated

Search features with annotation key words

Displaying items 1-30 of 1278 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_6_curated_1
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..3070
DNA (3069bp) protein (1023aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B35274
Uncharacterized protein {ECO:0000313|EMBL:KGT78752.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_6_curated_2
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3151..5070
DNA (1920bp) protein (640aa)
type I secretion protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B75E5A
Type I secretion system ABC transporter, PrtD family {ECO:0000313|EMBL:EHR01488.1}; Flags: Precursor;; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
Type I secretion system ATPase, PrtD
SCNpilot_cont_300_bf_scaffold_6_curated_3
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5067..6383
DNA (1317bp) protein (439aa)
hemolysin secretion protein D n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034D575B
Hemolysin secretion protein D {ECO:0000313|EMBL:KGT78751.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
HlyD family type I secretion membrane fusion protein; K02022 HlyD family secretion protein
SCNpilot_cont_300_bf_scaffold_6_curated_4
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6448..6708)
DNA (261bp) protein (87aa)
acyl carrier protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B56D48
Acyl carrier protein {ECO:0000313|EMBL:EJL50977.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
acpP; acyl carrier protein
SCNpilot_cont_300_bf_scaffold_6_curated_5
Mycobacterium vaccae, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6757..7983)
DNA (1227bp) protein (409aa)
pyridoxal-dependent decarboxylase exosortase system type 1 protein; K01586 diaminopimelate decarboxylase [EC:4.1.1.20]
diaminopimelate decarboxylase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B3A624
Pyridoxal-dependent decarboxylase exosortase system type 1 protein {ECO:0000313|EMBL:EJZ06970.1}; TaxID=1194972 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium vaccae ATCC 25954.;"
SCNpilot_cont_300_bf_scaffold_6_curated_6
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7980..9551)
DNA (1572bp) protein (524aa)
acyl-CoA ligase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B38592
acetyl-coenzyme A synthetase
Acetyl-coenzyme A synthetase {ECO:0000313|EMBL:AGZ41471.1}; TaxID=1246995 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
SCNpilot_cont_300_bf_scaffold_6_curated_7
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9581..10450)
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B497BB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGZ41472.1}; TaxID=1246995 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
SCNpilot_cont_300_bf_scaffold_6_curated_8
Actinoplanes sp. SE50/110, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10515..11510)
DNA (996bp) protein (332aa)
Polypeptide N-acetylgalactosaminyltransferase 5 (EC:2.4.1.41)
Polypeptide N-acetylgalactosaminyltransferase 5 {ECO:0000313|EMBL:AEV83997.1}; EC=2.4.1.41 {ECO:0000313|EMBL:AEV83997.1};; TaxID=134676 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110).;"
glycosyl transferase family 2 n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B43D14
SCNpilot_cont_300_bf_scaffold_6_curated_9
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11521..12348)
DNA (828bp) protein (276aa)
metallophosphoesterase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B6C136
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:ABE63770.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_6_curated_10
unknown

Not on your lists

12576..13244
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034536E9
SCNpilot_cont_300_bf_scaffold_6_curated_11
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13377..18947)
DNA (5571bp) protein (1857aa)
Uncharacterized protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RCC1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB79227.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_6_curated_12
unknown

Not on your lists

19365..19898
DNA (534bp) protein (178aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_6_curated_13
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20067..20615
DNA (549bp) protein (183aa)
Acetyltransferase (Isoleucine patch superfamily) n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QB80_9BRAD
Putative transferase {ECO:0000313|EMBL:EJZ30856.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
putative transferase
SCNpilot_cont_300_bf_scaffold_6_curated_14
unknown

Not on your lists

20783..21445
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B66609
SCNpilot_cont_300_bf_scaffold_6_curated_15
unknown

Not on your lists

comp(22049..22156)
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_6_curated_16
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22303..22491)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DE75_BRAJP
Uncharacterized protein {ECO:0000313|EMBL:KGJ69955.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_6_curated_17
unknown

Not on your lists

comp(23170..23325)
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_6_curated_18
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23899..25086
DNA (1188bp) protein (396aa)
Putative Transporter n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TWB5_9BRAD
Putative Transporter {ECO:0000313|EMBL:CCE10753.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
transporter
SCNpilot_cont_300_bf_scaffold_6_curated_19
unknown

Not on your lists

25126..25578
DNA (453bp) protein (151aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_6_curated_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25677..26816
DNA (1140bp) protein (380aa)
acyl-CoA dehydrogenase domain-containing protein; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
Acyl-CoA dehydrogenase domain protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07PE4_RHOP5
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ABJ06190.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_300_bf_scaffold_6_curated_21
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26924..28084
DNA (1161bp) protein (387aa)
acyl-CoA dehydrogenase; K11731 citronellyl-CoA dehydrogenase [EC:1.3.99.-]
Citronellyl-CoA dehydrogenase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HDI5_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig175, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48937.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_cont_300_bf_scaffold_6_curated_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28097..28747
DNA (651bp) protein (217aa)
Glutathione S-transferase n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YC61_9BRAD
Glutathione S-transferase {ECO:0000313|EMBL:KIZ39470.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
glutathione S-transferase rbh
SCNpilot_cont_300_bf_scaffold_6_curated_23
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28897..29718
DNA (822bp) protein (274aa)
Transcriptional regulator, AraC family n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q138Q3_RHOPS
AraC family transcriptional regulator {ECO:0000313|EMBL:KIZ39471.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
AraC family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_6_curated_24
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29826..30695
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002ED14F9
Iron complex transport system permease {ECO:0000313|EMBL:ERF82862.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein rbh
SCNpilot_cont_300_bf_scaffold_6_curated_25
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30824..32419
DNA (1596bp) protein (532aa)
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:EGP06377.1}; EC=6.2.1.3 {ECO:0000313|EMBL:EGP06377.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
Long-chain-fatty-acid--CoA ligase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QR10_9BRAD
AMP-dependent synthetase and ligase
SCNpilot_cont_300_bf_scaffold_6_curated_26
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32577..34136
DNA (1560bp) protein (520aa)
3-methylcrotonoyl-CoA carboxylase subunit beta; K13778 geranyl-CoA carboxylase beta subunit [EC:6.4.1.5]
3-methylcrotonyl-CoA carboxylase subunit beta n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036A2737
Bradyrhizobium elkanii strain UASWS1015 Contig175, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48933.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_cont_300_bf_scaffold_6_curated_27
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34133..36130
DNA (1998bp) protein (666aa)
carbamoyl-phosphate synthase L chain, ATP-binding; K13777 geranyl-CoA carboxylase alpha subunit [EC:6.4.1.5]
Acetyl-CoA carboxylase, biotin carboxylase subunit n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IGN2_9BRAD
Acetyl-CoA carboxylase, biotin carboxylase subunit {ECO:0000313|EMBL:ERF82865.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
SCNpilot_cont_300_bf_scaffold_6_curated_28
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36143..36925
DNA (783bp) protein (261aa)
enoyl-CoA hydratase (EC:4.2.1.17)
Putative carnitinyl-CoA dehydratase (Crotonobetainyl-CoA hydratase) {ECO:0000313|EMBL:CAL78971.1}; EC=4.2.1.- {ECO:0000313|EMBL:CAL78971.1};; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
Putative carnitinyl-CoA dehydratase (Crotonobetainyl-CoA hydratase) n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YYJ5_BRASO
SCNpilot_cont_300_bf_scaffold_6_curated_29
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36964..38508
DNA (1545bp) protein (515aa)
AMP-dependent synthetase and ligase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q138P7_RHOPS
Long-chain fatty acid--CoA ligase {ECO:0000313|EMBL:KIZ32842.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
AMP-dependent synthetase and ligase
SCNpilot_cont_300_bf_scaffold_6_curated_30
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38592..39023)
DNA (432bp) protein (144aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20ZS9_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD89357.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Displaying items 1-30 of 1278 in total

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