ggKbase home page

SCNpilot_cont_500_bf_scaffold_593_curated

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_593_curated_1
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..2801
DNA (2799bp) protein (933aa)
Uncharacterized protein (Fragment) n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3HUN7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EMG51372.1}; Flags: Fragment;; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
outer membrane autotransporter barrel domain protein
SCNpilot_cont_500_bf_scaffold_593_curated_2
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2874..3425
DNA (552bp) protein (184aa)
Invasion associated locus B family protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3IXD6_9RHIZ
Invasion associated locus B family protein {ECO:0000313|EMBL:EMG51371.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
Invasion associated locus B family protein
SCNpilot_cont_500_bf_scaffold_593_curated_3
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3588..4526)
DNA (939bp) protein (313aa)
glycine/betaine ABC transporter substrate-binding protein n=1 Tax=Ochrobactrum anthropi RepID=UPI00028996D4
Glycine/betaine ABC transporter substrate-binding protein {ECO:0000313|EMBL:EXL05207.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
substrate-binding region of ABC-type glycine betaine transport system
SCNpilot_cont_500_bf_scaffold_593_curated_4
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4659..5213)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3KEJ7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EMG53264.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_593_curated_5
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5308..6912)
DNA (1605bp) protein (535aa)
FGGY-family pentulose kinase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X2S1_OCHA4
FGGY-family pentulose kinase
FGGY-family pentulose kinase {ECO:0000313|EMBL:ABS15525.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_cont_500_bf_scaffold_593_curated_6
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7100..8401
DNA (1302bp) protein (434aa)
Uracil-xanthine permease n=2 Tax=Ochrobactrum intermedium RepID=C4WLL7_9RHIZ
Nitrate reductase {ECO:0000313|EMBL:ERI15903.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
uracil-xanthine permease; K02824 uracil permease
SCNpilot_cont_500_bf_scaffold_593_curated_7
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8396..8989)
DNA (594bp) protein (198aa)
Fructose-2,6-bisphosphatase n=1 Tax=Rhizobium sp. CF122 RepID=J2RA37_9RHIZ
Fructose-2,6-bisphosphatase {ECO:0000313|EMBL:EJL49507.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_593_curated_8
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9199..9411
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LEP9_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAJ94278.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_cont_500_bf_scaffold_593_curated_9
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9433..10164
DNA (732bp) protein (244aa)
Putative cobalt transporter subunit (CbtA) n=1 Tax=Rhizobium sp. CF142 RepID=J2KV60_9RHIZ
Putative cobalt transporter subunit (CbtA) {ECO:0000313|EMBL:EJJ24674.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_593_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10252..11970)
DNA (1719bp) protein (573aa)
Glutathione import ATP-binding protein GsiA {ECO:0000313|EMBL:EYR79276.1}; EC=3.6.3.- {ECO:0000313|EMBL:EYR79276.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gsiA3; Glutathione import ATP-binding protein GsiA (EC:3.6.3.-)
Glutathione import ATP-binding protein GsiA n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0PIW7_RHIML
SCNpilot_cont_500_bf_scaffold_593_curated_11
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11970..12869)
DNA (900bp) protein (300aa)
ABC transporter permease n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UVC0_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:ENN84706.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
ABC transporter permease
SCNpilot_cont_500_bf_scaffold_593_curated_12
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12869..13834)
DNA (966bp) protein (322aa)
Putative ABC-transporter permease protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6USN5_9RHIZ
Putative ABC-transporter permease protein {ECO:0000313|EMBL:ENN84705.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
dppB; Dipeptide transport system permease protein dppB
SCNpilot_cont_500_bf_scaffold_593_curated_13
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13953..15524)
DNA (1572bp) protein (524aa)
Putative peptide-binding protein periplasmic ABC transporter protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6TW81_9RHIZ
Putative peptide-binding protein periplasmic ABC transporter protein {ECO:0000313|EMBL:ENN84704.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
ABC transporter substrate-binding protein
SCNpilot_cont_500_bf_scaffold_593_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15683..17050
DNA (1368bp) protein (456aa)
Atrazine chlorohydrolase AtzA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EF10_9RHIZ
Cytosine deaminase {ECO:0000313|EMBL:EYR79280.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative hydrolase protein
SCNpilot_cont_500_bf_scaffold_593_curated_15
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17069..18265
DNA (1197bp) protein (399aa)
Hydrolase n=1 Tax=Sinorhizobium meliloti (strain SM11) RepID=F7XBY3_SINMM
hydrolase
Hydrolase {ECO:0000313|EMBL:AEH82570.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_cont_500_bf_scaffold_593_curated_16
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18255..19724
DNA (1470bp) protein (490aa)
Hydrolase n=1 Tax=Sinorhizobium meliloti (strain SM11) RepID=F7XBY2_SINMM
hydrolase
Hydrolase {ECO:0000313|EMBL:CDH82493.1}; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
SCNpilot_cont_500_bf_scaffold_593_curated_17
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19967..23071
DNA (3105bp) protein (1035aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036405D2
UvrD/REP helicase
SCNpilot_cont_500_bf_scaffold_593_curated_18
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23131..24483)
DNA (1353bp) protein (451aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
integral membrane sensor signal transduction histidine kinase; K07645 two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Nitratireductor indicus C115 RepID=K2NXF0_9RHIZ
SCNpilot_cont_500_bf_scaffold_593_curated_19
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24483..25145)
DNA (663bp) protein (221aa)
Two component transcriptional regulator n=1 Tax=Nitratireductor indicus C115 RepID=K2N584_9RHIZ
Two component transcriptional regulator {ECO:0000313|EMBL:EKF42563.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
two component transcriptional regulator
SCNpilot_cont_500_bf_scaffold_593_curated_20
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25259..26452)
DNA (1194bp) protein (398aa)
Major facilitator superfamily (MFS) transporter n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LTH7_RHITR
major facilitator superfamily (MFS) transporter
Major facilitator superfamily (MFS) transporter {ECO:0000313|EMBL:AGB73445.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_593_curated_21
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26733..26912)
DNA (180bp) protein (60aa)
Uncharacterized protein n=169 Tax=Brucella RepID=F2HV24_BRUMM
Uncharacterized protein {ECO:0000313|EMBL:KGD96406.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_593_curated_22
Brucella sp. BO2, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26955..28067)
DNA (1113bp) protein (371aa)
ABC-2 type transporter n=1 Tax=Brucella sp. BO2 RepID=E2PSF2_9RHIZ
ABC transporter permease
ABC-2 type transporter {ECO:0000313|EMBL:EFM58091.1}; TaxID=693750 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. BO2.;"
SCNpilot_cont_500_bf_scaffold_593_curated_23
Brucella sp. 83/13, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28070..30841)
DNA (2772bp) protein (924aa)
ABC-2 type transport system n=2 Tax=Brucella RepID=D1CYU0_9RHIZ
ABC-2 type transport system {ECO:0000313|EMBL:EEZ33244.1}; TaxID=520449 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. 83/13.;"
ABC transporter ATP-binding protein/permease; K13926 ribosome-dependent ATPase
SCNpilot_cont_500_bf_scaffold_593_curated_24
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30838..31905)
DNA (1068bp) protein (356aa)
Secretion protein HlyD family protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6WZY5_OCHA4
secretion protein HlyD family protein; K01993 HlyD family secretion protein
Secretion protein HlyD family protein {ECO:0000313|EMBL:ABS14539.1}; Flags: Precursor;; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_cont_500_bf_scaffold_593_curated_25
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32377..32874
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X824_OCHA4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS17378.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_cont_500_bf_scaffold_593_curated_26
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32949..35063
DNA (2115bp) protein (705aa)
Catalase {ECO:0000256|RuleBase:RU000498}; EC=1.11.1.6 {ECO:0000256|RuleBase:RU000498};; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
catalase; K03781 catalase [EC:1.11.1.6]
Catalase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X823_OCHA4
SCNpilot_cont_500_bf_scaffold_593_curated_27
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35198..36622)
DNA (1425bp) protein (475aa)
uracil-DNA glycosylase; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7]
Uracil-DNA glycosylase superfamily n=2 Tax=Ochrobactrum intermedium RepID=C4WQU9_9RHIZ
Uracil-DNA glycosylase {ECO:0000313|EMBL:ELT49268.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
SCNpilot_cont_500_bf_scaffold_593_curated_28
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36619..37851)
DNA (1233bp) protein (411aa)
Predicted DNA-binding protein n=1 Tax=Ochrobactrum intermedium LMG 3301 RepID=C4WQU8_9RHIZ
Predicted DNA-binding protein {ECO:0000313|EMBL:EEQ94607.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
radical SAM domain-containing protein
SCNpilot_cont_500_bf_scaffold_593_curated_29
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39136..39699)
DNA (564bp) protein (188aa)
Acetyltransferase, GNAT family n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IYE0_RHOCS
acetyltransferase, GNAT family
Acetyltransferase, GNAT family {ECO:0000313|EMBL:ACJ01314.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCNpilot_cont_500_bf_scaffold_593_curated_30
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39907..43062)
DNA (3156bp) protein (1052aa)
Hydrophobe/amphiphile efflux-1 HAE1 n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q214A9_RHOPB
Acriflavine resistance protein B {ECO:0000313|EMBL:KGF69428.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
hydrophobe/amphiphile efflux-1 HAE1; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
Displaying items 1-30 of 48 in total

View Taxonomy