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SCNpilot_cont_500_bf_scaffold_344_curated

Search features with annotation key words

Displaying items 1-30 of 122 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_344_curated_1
unknown

Not on your lists

1..690
DNA (690bp) protein (230aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_344_curated_2
Ricinus communis, Ricinus, Malpighiales, rosids, Streptophyta, Viridiplantae

Not on your lists

comp(779..1420)
DNA (642bp) protein (214aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9TE92_RICCO
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EEF25823.1}; Flags: Fragment;; TaxID=3988 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus.;" source="Ricinus communis (Castor bean).;"
SCNpilot_cont_500_bf_scaffold_344_curated_3
unknown

Not on your lists

comp(1462..1851)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Ochrobactrum anthropi RepID=UPI000287E799
SCNpilot_cont_500_bf_scaffold_344_curated_4
Erwinia typographi, Erwinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2341..3666)
DNA (1326bp) protein (442aa)
hypothetical protein n=1 Tax=Streptomyces rapamycinicus RepID=UPI000382F8B8
MFS transporter {ECO:0000313|EMBL:KGT95627.1}; TaxID=371042 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Erwinia.;" source="Erwinia typographi.;"
transporter; K08172 MFS transporter, MHS family, shikimate and dehydroshikimate transport protein rbh
SCNpilot_cont_500_bf_scaffold_344_curated_5
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3831..4727)
DNA (897bp) protein (299aa)
Dihydrodipicolinate synthase {ECO:0000313|EMBL:EPX85278.1}; EC=4.3.3.7 {ECO:0000313|EMBL:EPX85278.1};; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
dihydrodipicolinate synthase n=1 Tax=Variovorax paradoxus RepID=UPI00037CAE12
dihydrodipicolinate synthase
SCNpilot_cont_500_bf_scaffold_344_curated_6
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4848..6539)
DNA (1692bp) protein (564aa)
dihydroxyacetone kinase; K00863 dihydroxyacetone kinase [EC:2.7.1.29]
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002F030F2
Dihydroxyacetone kinase {ECO:0000313|EMBL:KJF72871.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
SCNpilot_cont_500_bf_scaffold_344_curated_7
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6570..7757)
DNA (1188bp) protein (396aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00030D98F5
aspC; putative aspartate transaminase
Putative aspartate transaminase {ECO:0000313|EMBL:AFK55014.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_cont_500_bf_scaffold_344_curated_8
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

8082..8987
DNA (906bp) protein (302aa)
Extracellular solute-binding protein family 3 n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1RC49_SPISS
family 3 extracellular solute-binding protein
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:ADK79929.1}; Flags: Precursor;; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228).;"
SCNpilot_cont_500_bf_scaffold_344_curated_9
Geobacillus kaustophilus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9050..9781
DNA (732bp) protein (244aa)
amino acid ABC transporter ATPase n=1 Tax=Paenibacillus elgii RepID=UPI000248C4B6
glnQ1; glutamine ABC transporter ATP-binding protein
ABC transporter family protein {ECO:0000313|EMBL:KJE27519.1}; TaxID=1462 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus kaustophilus.;"
SCNpilot_cont_500_bf_scaffold_344_curated_10
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

9795..10466
DNA (672bp) protein (224aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1RC51_SPISS
polar amino acid ABC transporter inner membrane protein
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ADK79931.1}; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228).;"
SCNpilot_cont_500_bf_scaffold_344_curated_11
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

10474..11145
DNA (672bp) protein (224aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1RC52_SPISS
polar amino acid ABC transporter inner membrane protein
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ADK79932.1}; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228).;"
SCNpilot_cont_500_bf_scaffold_344_curated_12
Sodalis praecaptivus, Sodalis, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11159..11962
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AUH4_AZOBR
Putative transcriptional regulator {ECO:0000313|EMBL:AHF77418.1}; TaxID=1239307 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Sodalis.;" source="Sodalis praecaptivus.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_344_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11999..13837)
DNA (1839bp) protein (613aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000313FFA8
Carbohydrate diacid transcriptional activator CdaR {ECO:0000313|EMBL:KFC70872.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
transcriptional regulator, pucr family
SCNpilot_cont_500_bf_scaffold_344_curated_14
Burkholderia phenoliruptrix, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13934..14515
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F7AFB8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFT88432.1}; TaxID=1229205 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phenoliruptrix BR3459a.;"
SCNpilot_cont_500_bf_scaffold_344_curated_15
RBG_16_Chloroflexi_54_18_curated, Chloroflexi, Bacteria

Not on your lists

comp(14589..15221)
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002EB9EAB
isochorismatase hydrolase
Tax=RBG_16_Chloroflexi_54_18_curated
SCNpilot_cont_500_bf_scaffold_344_curated_16
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15307..16338)
DNA (1032bp) protein (344aa)
L-proline glycine betaine binding ABC transporter protein ProX n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RI86_9RHIZ
L-proline glycine betaine binding ABC transporter protein ProX {ECO:0000313|EMBL:ESR25049.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
proX; glycine betaine transporter periplasmic subunit; K02002 glycine betaine/proline transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_344_curated_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16402..17355)
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D32114
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:KFC70879.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
glycine betaine/proline transport system permease
SCNpilot_cont_500_bf_scaffold_344_curated_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17342..18547)
DNA (1206bp) protein (402aa)
Methionine import ATP-binding protein MetN {ECO:0000313|EMBL:KFC70878.1}; EC=3.6.3.- {ECO:0000313|EMBL:KFC70878.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
glycine betaine/L-proline ABC transporter ATPase; K02000 glycine betaine/proline transport system ATP-binding protein [EC:3.6.3.32]
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00036E8F1A
SCNpilot_cont_500_bf_scaffold_344_curated_19
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18642..18956)
DNA (315bp) protein (105aa)
NIPSNAP family containing protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000317EB8B
NIPSNAP domain-containing protein
NIPSNAP domain containing protein {ECO:0000313|EMBL:ABG63912.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_500_bf_scaffold_344_curated_20
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18953..19345)
DNA (393bp) protein (131aa)
Carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
4-carboxymuconolactone decarboxylase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F51F58
Uncharacterized protein, gamma-carboxymuconolactone decarboxylase subunit like protein {ECO:0000313|EMBL:EJB06353.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
SCNpilot_cont_500_bf_scaffold_344_curated_21
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19338..20150)
DNA (813bp) protein (271aa)
3-oxoadipate enol-lactonase {ECO:0000313|EMBL:ABG63910.1}; EC=3.1.1.24 {ECO:0000313|EMBL:ABG63910.1};; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
3-oxoadipate enol-lactonase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11FB5_MESSB
alpha/beta hydrolase
SCNpilot_cont_500_bf_scaffold_344_curated_22
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20147..21232)
DNA (1086bp) protein (362aa)
Luciferase-like protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11FB6_MESSB
Luciferase {ECO:0000313|EMBL:KJR64259.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
luciferase-like protein
SCNpilot_cont_500_bf_scaffold_344_curated_23
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21326..22837)
DNA (1512bp) protein (504aa)
aldehyde dehydrogenase (acceptor); K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
carnitine dehydratase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D514C5
Carnitine dehydratase {ECO:0000313|EMBL:KJR64258.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
SCNpilot_cont_500_bf_scaffold_344_curated_24
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22857..23813)
DNA (957bp) protein (319aa)
flavin reductase n=1 Tax=Rhizobium loti RepID=UPI00036998E1
Flavin reductase domain protein FMN-binding {ECO:0000313|EMBL:CDX30703.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
conserved protein of DIM6/NTAB family
SCNpilot_cont_500_bf_scaffold_344_curated_25
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24075..24806)
DNA (732bp) protein (244aa)
rbtD; Ribitol 2-dehydrogenase (RDH) (EC:1.1.1.56)
glucose dehydrogenase n=1 Tax=Aureimonas ureilytica RepID=UPI0003679B96
Strain MEJ076 contig_16, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ00882.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_cont_500_bf_scaffold_344_curated_26
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24854..25828)
DNA (975bp) protein (325aa)
ribose ABC transporter permease n=1 Tax=Martelella mediterranea RepID=UPI00036842CE
inner-membrane translocator; K10440 ribose transport system permease protein
Monosaccharide ABC transporter membrane protein, CUT2 family {ECO:0000313|EMBL:ABL70250.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_cont_500_bf_scaffold_344_curated_27
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25818..27320)
DNA (1503bp) protein (501aa)
ABC transporter; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
Monosaccharide ABC transporter ATP-binding protein, CUT2 family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B407_PARDP
Ribonucleotide-diphosphate reductase subunit alpha {ECO:0000313|EMBL:KGJ11748.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
SCNpilot_cont_500_bf_scaffold_344_curated_28
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27388..28290)
DNA (903bp) protein (301aa)
LacI family transcriptional regulator n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00037258DE
ribose ABC transporter periplasmic ribose-binding protein; K10439 ribose transport system substrate-binding protein
ABC transporter, substrate binding protein (Ribose) {ECO:0000313|EMBL:EGP55886.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
SCNpilot_cont_500_bf_scaffold_344_curated_29
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28428..29270)
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Rhizobium radiobacter RepID=UPI00037CD689
HAD family hydrolase {ECO:0000313|EMBL:KJF72775.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
HAD-superfamily subfamily IIA hydrolase
SCNpilot_cont_500_bf_scaffold_344_curated_30
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29267..30544)
DNA (1278bp) protein (426aa)
hypothetical protein n=1 Tax=Rhizobium radiobacter RepID=UPI00037D6AD0
Carbohydrate kinase {ECO:0000313|EMBL:KJF72776.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
carbohydrate kinase
Displaying items 1-30 of 122 in total

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