ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1114_curated

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1114_curated_1
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4..348)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=S9ZL70_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EPZ14222.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1114_curated_2
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

524..1501
DNA (978bp) protein (326aa)
Transcriptional regulator, DeoR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EWP9_9RHIZ
Putative transcriptional regulator protein, LacI family {ECO:0000313|EMBL:AHK46267.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
DeoR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1114_curated_3
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1563..3617
DNA (2055bp) protein (685aa)
short-chain dehydrogenase n=1 Tax=Ochrobactrum anthropi RepID=UPI0002883430
Short-chain dehydrogenase {ECO:0000313|EMBL:EXL03135.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
short chain dehydrogenase
SCNpilot_expt_1000_bf_scaffold_1114_curated_4
unknown

Not on your lists

comp(3859..4056)
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1114_curated_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4181..5224)
DNA (1044bp) protein (348aa)
sugar ABC transporter substrate-binding protein n=1 Tax=Ochrobactrum anthropi RepID=UPI0002899CEC
Ribose ABC transporter, periplasmic ribose-binding protein {ECO:0000313|EMBL:AHK46268.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
putative sugar uptake ABC transporter periplasmic solute-binding protein; K02058 simple sugar transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1114_curated_6
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5280..6338)
DNA (1059bp) protein (353aa)
ABC-type transporter, integral membrane subunit n=5 Tax=Rhizobium meliloti RepID=F6E6S2_SINMK
Ribose ABC transporter, permease protein {ECO:0000313|EMBL:AHK46269.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
monosaccharide-transporting ATPase; K02057 simple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1114_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6335..7852)
DNA (1518bp) protein (506aa)
Ribose import ATP-binding protein RbsA 2 {ECO:0000313|EMBL:EYR81686.1}; EC=3.6.3.17 {ECO:0000313|EMBL:EYR81686.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter-like protein; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
Ribose import ATP-binding protein RbsA 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFD7_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1114_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8022..9293
DNA (1272bp) protein (424aa)
Methylthioribose kinase {ECO:0000256|HAMAP-Rule:MF_01683}; Short=MTR kinase {ECO:0000256|HAMAP-Rule:MF_01683};; EC=2.7.1.100 {ECO:0000256|HAMAP-Rule:MF_01683};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mtnK; methylthioribose kinase (EC:2.7.1.100); K00899 5-methylthioribose kinase [EC:2.7.1.100]
Methylthioribose kinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWI5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1114_curated_9
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9290..10384
DNA (1095bp) protein (365aa)
Methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
mtnA; methylthioribose-1-phosphate isomerase; K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
methylthioribose-1-phosphate isomerase n=1 Tax=Ochrobactrum anthropi RepID=UPI000287AE11
SCNpilot_expt_1000_bf_scaffold_1114_curated_10
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10390..11328
DNA (939bp) protein (313aa)
transketolase domain-containing protein; K00615 transketolase [EC:2.2.1.1]
Transketolase domain protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X8F0_OCHA4
Transketolase {ECO:0000313|EMBL:KDP74193.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_1114_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11331..12332
DNA (1002bp) protein (334aa)
transketolase central region; K00615 transketolase [EC:2.2.1.1]
Transketolase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CS25_9RHIZ
Transketolase {ECO:0000313|EMBL:EYR81690.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_1114_curated_12
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12332..13447
DNA (1116bp) protein (372aa)
RuBisCO-like protein; K01601 ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
RuBisCO n=1 Tax=Ochrobactrum anthropi RepID=UPI000289F185
Ribulose bisphosphate carboxylase large chain 1 {ECO:0000313|EMBL:AHK46273.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_expt_1000_bf_scaffold_1114_curated_13
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13572..14678
DNA (1107bp) protein (369aa)
Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42]
Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}; EC=2.6.1.42 {ECO:0000256|RuleBase:RU004517};; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
Branched-chain-amino-acid aminotransferase n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JU65_AGRVS
SCNpilot_expt_1000_bf_scaffold_1114_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14967..16784
DNA (1818bp) protein (606aa)
Alkaline phosphatase PhoA {ECO:0000313|EMBL:EYR84171.1}; EC=3.1.3.1 {ECO:0000313|EMBL:EYR84171.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Alkaline phosphatase PhoA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C6R9_9RHIZ
alkaline phosphatase protein
SCNpilot_expt_1000_bf_scaffold_1114_curated_15
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16850..17314
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P4R2_AZOS1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI75641.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_expt_1000_bf_scaffold_1114_curated_16
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17314..18000
DNA (687bp) protein (229aa)
ABC transporter ATP-binding protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P4R3_AZOS1
ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAI75642.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_expt_1000_bf_scaffold_1114_curated_17
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17997..19265
DNA (1269bp) protein (423aa)
Putative lipoprotein-releasing system permease protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVJ8_RHITR
putative lipoprotein-releasing system permease protein
Putative lipoprotein-releasing system permease protein {ECO:0000313|EMBL:AGB75318.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1114_curated_18
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19281..20144)
DNA (864bp) protein (288aa)
Putative permease, DMT superfamily n=1 Tax=Phyllobacterium sp. YR531 RepID=J2V168_9RHIZ
Putative permease, DMT superfamily {ECO:0000313|EMBL:EJM99321.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1114_curated_19
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20521..20817
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000370D424
Uncharacterized protein {ECO:0000313|EMBL:AHK46552.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1114_curated_20
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20814..21347)
DNA (534bp) protein (178aa)
HIT family protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TP42_TISMK
HIT family protein
HIT family protein {ECO:0000313|EMBL:AFK54530.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_1000_bf_scaffold_1114_curated_21
unknown

Not on your lists

21528..21698
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1114_curated_22
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21706..23208)
DNA (1503bp) protein (501aa)
two-component sensor histidine kinase/response regulator hybrid protein (EC:2.7.3.-)
Blue-light-activated protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CAP8_9RHIZ
Two component sensor kinase/response regulator hybrid {ECO:0000313|EMBL:CDN50827.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
SCNpilot_expt_1000_bf_scaffold_1114_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23168..24727)
DNA (1560bp) protein (520aa)
Blue-light-activated protein {ECO:0000313|EMBL:EYR84668.1}; EC=2.7.13.3 {ECO:0000313|EMBL:EYR84668.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Blue-light-activated protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CAP8_9RHIZ
multi-sensor hybrid histidine kinase
SCNpilot_expt_1000_bf_scaffold_1114_curated_24
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24788..25387)
DNA (600bp) protein (200aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
PAS domain S-box n=1 Tax=Microvirga sp. WSM3557 RepID=I4YY61_9RHIZ
PAS/PAC domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1114_curated_25
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25872..26276
DNA (405bp) protein (135aa)
Putative signal transduction protein with CBS domains n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FUN1_RHIML
signal transduction protein
Putative signal transduction protein with CBS domains {ECO:0000313|EMBL:EHK79216.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
SCNpilot_expt_1000_bf_scaffold_1114_curated_26
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26273..26521
DNA (249bp) protein (83aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00037B2F4D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL50010.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_expt_1000_bf_scaffold_1114_curated_27
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26556..27611)
DNA (1056bp) protein (352aa)
putative DNA topoisomerase I protein; K03168 DNA topoisomerase I [EC:5.99.1.2]
Topoisomerase IB n=1 Tax=Rhizobium sp. CF080 RepID=J3CWB4_9RHIZ
Topoisomerase IB {ECO:0000313|EMBL:CDN49489.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
SCNpilot_expt_1000_bf_scaffold_1114_curated_28
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27752..29299
DNA (1548bp) protein (516aa)
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase n=1 Tax=Rhizobium sp. CF080 RepID=J2I549_9RHIZ
Phospholipase D {ECO:0000313|EMBL:KGD96284.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
phospholipase D/transphosphatidylase
SCNpilot_expt_1000_bf_scaffold_1114_curated_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29230..30189)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWU3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR77996.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K07027
SCNpilot_expt_1000_bf_scaffold_1114_curated_30
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30253..31038
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00036C4119
Endonuclease {ECO:0000313|EMBL:KGF67702.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
hypothetical protein; K06896
Displaying items 1-30 of 42 in total

View Taxonomy