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SCNpilot_expt_1000_bf_scaffold_2034_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2034_curated_1
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(496..945)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B77C5B
thioesterase superfamily protein
Thioesterase superfamily protein {ECO:0000313|EMBL:AGS26555.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_2034_curated_2
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(996..1799)
DNA (804bp) protein (268aa)
3-hydroxybutyrate dehydrogenase n=1 Tax=Rhizobium mongolense RepID=UPI0003B45FFF
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:AIB15730.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
D-beta-hydroxybutyrate dehydrogenase (BDH) (3-hydroxybutyrate dehydrogenase) (3-HBDH)
SCNpilot_expt_1000_bf_scaffold_2034_curated_3
Mesorhizobium sp. LNJC372A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1865..2749)
DNA (885bp) protein (295aa)
NADPH dependend quinone reductase n=1 Tax=Rhizobium mongolense RepID=UPI0003B72344
NADPH dependend quinone reductase {ECO:0000313|EMBL:ESY50735.1}; TaxID=1287256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC372A00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2034_curated_4
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2777..5056)
DNA (2280bp) protein (760aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B8M6_STRRD
L-carnitine dehydratase/bile acid-inducible protein F
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ACZ87836.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
SCNpilot_expt_1000_bf_scaffold_2034_curated_5
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

5408..6286
DNA (879bp) protein (293aa)
Transcriptional regulator, LacI family n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FCE9_CONWI
LacI family transcriptional regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ADB49422.1}; Flags: Precursor;; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_expt_1000_bf_scaffold_2034_curated_6
Mycobacterium setense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6641..7738
DNA (1098bp) protein (366aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=431269 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium setense.;"
ABC transporter n=1 Tax=Patulibacter americanus RepID=UPI0003B760D0
spermidine/putrescine ABC transporter ATPase
SCNpilot_expt_1000_bf_scaffold_2034_curated_7
Mycobacterium setense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7822..8931
DNA (1110bp) protein (370aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036AA32B
ABC transporter {ECO:0000313|EMBL:KHO27142.1}; TaxID=431269 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium setense.;"
potD; extracellular solute-binding protein family 1
SCNpilot_expt_1000_bf_scaffold_2034_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8989..9915)
DNA (927bp) protein (309aa)
Urate catabolism protein {ECO:0000313|EMBL:EYR79419.1}; EC=3.5.1.41 {ECO:0000313|EMBL:EYR79419.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
urate catabolism protein (EC:3.5.1.41)
Urate catabolism protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXW8_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2034_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9926..11170)
DNA (1245bp) protein (415aa)
Allantoate amidohydrolase AllC {ECO:0000313|EMBL:EYR79418.1}; EC=3.5.3.- {ECO:0000313|EMBL:EYR79418.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
amidase (EC:3.5.1.87); K02083 allantoate deiminase [EC:3.5.3.9]
Allantoate amidohydrolase AllC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGY9_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2034_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11296..12090)
DNA (795bp) protein (265aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase {ECO:0000313|EMBL:EYR79416.1}; EC=3.5.4.28 {ECO:0000313|EMBL:EYR79416.1};; EC=3.5.4.31 {ECO:0000313|EMBL:EYR79416.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
5-methylthioadenosine/S-adenosylhomocysteine deaminase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5V9_9RHIZ
amidohydrolase
SCNpilot_expt_1000_bf_scaffold_2034_curated_11
unknown

Not on your lists

12302..12685
DNA (384bp) protein (128aa)

This feature has no annotations

Displaying 11 items

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