ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2037_curated

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2037_curated_1
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..705)
DNA (705bp) protein (235aa)
UPI0003D68D81 related cluster n=1 Tax=unknown RepID=UPI0003D68D81
Uncharacterized protein {ECO:0000313|EMBL:ETI60079.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2037_curated_2
unknown

Not on your lists

719..880
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2037_curated_3
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(877..1629)
DNA (753bp) protein (251aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HY72_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KEZ18645.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2037_curated_4
bacterium YEK0313, Bacteria

Not on your lists

comp(1638..2285)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q124_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CEJ16306.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2037_curated_5
bacterium YEK0313, Bacteria

Not on your lists

comp(2359..5634)
DNA (3276bp) protein (1092aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
dnaE; DNA polymerase III alpha subunit (EC:2.7.7.7); K14162 error-prone DNA polymerase [EC:2.7.7.7]
Error-prone DNA polymerase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QHS3_BREDI
SCNpilot_expt_1000_bf_scaffold_2037_curated_6
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5631..6569)
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QIR3_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EKY27477.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
putative nucleotidyltransferase; K14161 protein ImuB
SCNpilot_expt_1000_bf_scaffold_2037_curated_7
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7193..7771)
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QHN2_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EKY27478.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
hypothetical protein; K14160 protein ImuA
SCNpilot_expt_1000_bf_scaffold_2037_curated_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8315..9958
DNA (1644bp) protein (548aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q138G9_RHOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE39520.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_1000_bf_scaffold_2037_curated_9
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9930..11483)
DNA (1554bp) protein (518aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HH57_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL26904.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2037_curated_10
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11506..12303)
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00037FCEF9
Protein Ymh {ECO:0000313|EMBL:KFL26903.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2037_curated_11
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12312..13127)
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00037E4E83
Uncharacterized protein {ECO:0000313|EMBL:KFL26902.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2037_curated_12
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13136..14899)
DNA (1764bp) protein (588aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA002 RepID=U8XNG7_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:EWC41191.1}; TaxID=1218352 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri KOS6.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2037_curated_13
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14896..15141)
DNA (246bp) protein (82aa)
Uncharacterized protein n=6 Tax=Proteobacteria RepID=A1W806_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EWC41192.1}; TaxID=1218352 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri KOS6.;"
SCNpilot_expt_1000_bf_scaffold_2037_curated_14
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15138..16049)
DNA (912bp) protein (304aa)
Uncharacterized protein n=5 Tax=Proteobacteria RepID=A1W805_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EWC41193.1}; TaxID=1218352 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri KOS6.;"
SCNpilot_expt_1000_bf_scaffold_2037_curated_15
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16042..16410)
DNA (369bp) protein (123aa)
DNA-binding protein, putative n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UC98_RHIRD
DNA-binding protein, putative {ECO:0000313|EMBL:EGP55076.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
helix-turn-helix domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2037_curated_16
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16412..16777)
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000363B6CA
Uncharacterized protein {ECO:0000313|EMBL:KEQ52175.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2037_curated_17
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16796..17098)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003609453
Uncharacterized protein {ECO:0000313|EMBL:EKY27485.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2037_curated_18
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17091..18512)
DNA (1422bp) protein (474aa)
integrase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037AE0A0
Integrase family protein {ECO:0000313|EMBL:KEQ55366.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
integrase family protein
SCNpilot_expt_1000_bf_scaffold_2037_curated_19
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18982..20622
DNA (1641bp) protein (547aa)
acetyl-CoA synthetase; K01895 acetyl-CoA synthetase [EC:6.2.1.1]
Acetyl-CoA synthetase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JBN2_AGRRK
Acetyl-CoA synthetase protein {ECO:0000313|EMBL:ACM27928.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_2037_curated_20
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20623..21873)
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3C9X9_9RHIZ
Protein involved in cellulose biosynthesis (CelD) {ECO:0000313|EMBL:CDN52785.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2037_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21876..23291)
DNA (1416bp) protein (472aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037458D8
polysaccharide biosynthesis associated protein
Membrane protein involved in the export of O-antigen and teichoic acid {ECO:0000313|EMBL:EYR79747.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_2037_curated_22
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23467..26190)
DNA (2724bp) protein (908aa)
Protein translocase subunit SecA n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0PDR3_RHIML
Protein translocase subunit SecA {ECO:0000255|HAMAP-Rule:MF_01382}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
secA; preprotein translocase subunit SecA
SCNpilot_expt_1000_bf_scaffold_2037_curated_23
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26435..27274
DNA (840bp) protein (280aa)
PpiC-type peptidyl-prolyl cis-trans isomerase; K03769 peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
Parvulin-like peptidyl-prolyl isomerase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VT25_RHILT
Parvulin-like peptidyl-prolyl isomerase {ECO:0000313|EMBL:EJC75953.1}; Flags: Precursor;; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
SCNpilot_expt_1000_bf_scaffold_2037_curated_24
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27333..28574
DNA (1242bp) protein (414aa)
argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase; K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
N-acetylglutamate synthase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000372FB9C
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
SCNpilot_expt_1000_bf_scaffold_2037_curated_25
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28578..29357
DNA (780bp) protein (260aa)
Acetyltransferase n=1 Tax=Rhizobium sp. CF142 RepID=J1T1A6_9RHIZ
Acetyltransferase {ECO:0000313|EMBL:EJJ25401.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
acetyltransferase
SCNpilot_expt_1000_bf_scaffold_2037_curated_26
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29364..29771
DNA (408bp) protein (136aa)
mutT; NTP pyrophosphohydrolase; K03574 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-]
NTP pyrophosphohydrolase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PZV8_9RHIZ
NTP pyrophosphohydrolase {ECO:0000313|EMBL:EKF56984.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
SCNpilot_expt_1000_bf_scaffold_2037_curated_27
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29863..30183
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2P7J0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF56983.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2037_curated_28
unknown

Not on your lists

30308..30481
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2037_curated_29
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30539..31423)
DNA (885bp) protein (295aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Rhizobium sp. CF122 RepID=J3BSQ9_9RHIZ
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:EJL56854.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
methyltransferase protein
SCNpilot_expt_1000_bf_scaffold_2037_curated_30
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31524..31919
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V169_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN87595.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
competence protein F
Displaying 30 items

View Taxonomy