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SCNpilot_expt_1000_bf_scaffold_1626_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1626_curated_1
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1192
DNA (1191bp) protein (397aa)
ABC transporter related protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F4A8_9RHIZ
ABC transporter related protein {ECO:0000313|EMBL:EHS52439.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
lipid A transporter permease/ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1626_curated_2
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1195..2016
DNA (822bp) protein (274aa)
dapB; dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26]
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1MMY3_RHIL3
SCNpilot_expt_1000_bf_scaffold_1626_curated_3
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2031..2666
DNA (636bp) protein (212aa)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01039};; Short=dPGM {ECO:0000256|HAMAP-Rule:MF_01039};; EC=5.4.2.11 {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512};; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobia
phosphoglyceromutase n=1 Tax=Rhizobium sp. JGI 0001005-H05 RepID=UPI000374723E
phosphoglyceromutase
SCNpilot_expt_1000_bf_scaffold_1626_curated_4
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2740..4815)
DNA (2076bp) protein (692aa)
Trimethylamine dehydrogenase {ECO:0000313|EMBL:CDX32839.1}; EC=1.5.8.2 {ECO:0000313|EMBL:CDX32839.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Trimethylamine dehydrogenase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FDF8_9RHIZ
NADH:flavin oxidoreductase/NADH oxidase
SCNpilot_expt_1000_bf_scaffold_1626_curated_5
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5035..6192
DNA (1158bp) protein (386aa)
Acetylornithine deacetylase {ECO:0000256|SAAS:SAAS00063950}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279026};; EC=3.5.1.- {ECO:0000256|SAAS:SAAS00279018};; EC=3.5.1.16 {ECO:0000256|SAAS:SAAS00063953};; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
acetylornithine deacetylase; K01438 acetylornithine deacetylase [EC:3.5.1.16]
UPI0003D04856 related cluster n=1 Tax=unknown RepID=UPI0003D04856
SCNpilot_expt_1000_bf_scaffold_1626_curated_6
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6189..7130)
DNA (942bp) protein (314aa)
UPI0003CFA4BA related cluster n=1 Tax=unknown RepID=UPI0003CFA4BA
LysR family transcriptional regulator {ECO:0000313|EMBL:ESZ28568.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1626_curated_7
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7162..8673)
DNA (1512bp) protein (504aa)
aldehyde dehydrogenase; K09472 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase [EC:1.2.1.-]
PREDICTED: aldehyde dehydrogenase family 2 member B4, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C12176
Aldehyde dehydrogenase {ECO:0000313|EMBL:ESY71633.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
SCNpilot_expt_1000_bf_scaffold_1626_curated_8
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8696..9370)
DNA (675bp) protein (225aa)
UPI0003D01626 related cluster n=1 Tax=unknown RepID=UPI0003D01626
Uncharacterized protein {ECO:0000313|EMBL:ESZ28570.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1626_curated_9
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9377..9790)
DNA (414bp) protein (138aa)
UPI0003D02D51 related cluster n=1 Tax=unknown RepID=UPI0003D02D51
endoribonuclease L-PSP
Endoribonuclease {ECO:0000313|EMBL:ESZ28571.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
SCNpilot_expt_1000_bf_scaffold_1626_curated_10
unknown

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comp(9800..9898)
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1626_curated_11
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9926..11458)
DNA (1533bp) protein (511aa)
Vinylacetyl-CoA delta-isomerase (EC:5.3.3.3); K00483 4-hydroxyphenylacetate-3-monooxygenase large chain [EC:1.14.14.9]
Probable 4-hydroxyphenylacetic hydroxylase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TSP7_9PROT
Probable 4-hydroxyphenylacetic hydroxylase {ECO:0000313|EMBL:EDP64301.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
SCNpilot_expt_1000_bf_scaffold_1626_curated_12
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11633..12868
DNA (1236bp) protein (412aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
PREDICTED: sulfate/thiosulfate import ATP-binding protein cysA-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C11B80
potA; spermidine/putrescine ABC transporter ATP-binding protein; K02052 putative spermidine/putrescine transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1626_curated_13
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12865..13761
DNA (897bp) protein (299aa)
UPI0003CFD026 related cluster n=1 Tax=unknown RepID=UPI0003CFD026
ABC transporter permease {ECO:0000313|EMBL:ESZ28579.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
potB; spermidine/putrescine ABC transporter permease PotB; K02054 putative spermidine/putrescine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1626_curated_14
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13758..14546
DNA (789bp) protein (263aa)
PREDICTED: probable sulfate transport system permease protein cysT-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C172D1
ABC transporter permease {ECO:0000313|EMBL:ESZ28580.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
potC; spermidine/putrescine ABC transporter permease PotC; K02053 putative spermidine/putrescine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1626_curated_15
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14633..15670
DNA (1038bp) protein (346aa)
UPI0003CFEF89 related cluster n=1 Tax=unknown RepID=UPI0003CFEF89
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
potD; spermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein; K02055 putative spermidine/putrescine transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1626_curated_16
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15836..16612
DNA (777bp) protein (259aa)
Ferric iron reductase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FA46_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGD96846.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
iron reductase; K13255 ferric iron reductase protein FhuF
SCNpilot_expt_1000_bf_scaffold_1626_curated_17
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16677..17117)
DNA (441bp) protein (147aa)
Ribose-5-phosphate isomerase B {ECO:0000313|EMBL:EJT01708.1}; EC=5.3.1.6 {ECO:0000313|EMBL:EJT01708.1};; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
rpiB; ribose-5-phosphate isomerase B (EC:5.3.1.6); K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6]
Ribose-5-phosphate isomerase B n=1 Tax=Rhizobium sp. CCGE 510 RepID=J5PNI4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1626_curated_18
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17157..17927)
DNA (771bp) protein (257aa)
tpiA; protein TpiA; K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1]
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
Triosephosphate isomerase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AFW0_RHIFH
SCNpilot_expt_1000_bf_scaffold_1626_curated_19
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18126..18953)
DNA (828bp) protein (276aa)
HAD superfamily protein involved in N-acetyl-glucosamine catabolism n=1 Tax=Rhizobium sp. (strain NGR234) RepID=Q6W291_RHISN
HAD superfamily protein involved in N-acetyl-glucosamine catabolism
HAD superfamily protein involved in N-acetyl-glucosamine catabolism {ECO:0000313|EMBL:AAQ87126.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_1626_curated_20
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18953..20233)
DNA (1281bp) protein (427aa)
Carbohydrate kinase, FGGY n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AFV6_RHIFH
Xylulose kinase {ECO:0000313|EMBL:AHK44925.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
xylB; carbohydrate kinase
SCNpilot_expt_1000_bf_scaffold_1626_curated_21
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20230..20439)
DNA (210bp) protein (70aa)
Class II aldolase/adducin family protein n=6 Tax=Rhizobium meliloti RepID=F6BUK6_SINMB
N-acylmannosamine 1-dehydrogenase {ECO:0000313|EMBL:KDP74989.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
class II aldolase/adducin family protein
Displaying 21 items

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