ggKbase home page

SCNpilot_expt_1000_bf_scaffold_714_curated

Search features with annotation key words

Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_714_curated_1
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..643
DNA (642bp) protein (214aa)
sulfate ABC transporter ATPase (EC:3.6.3.25); K02045 sulfate transport system ATP-binding protein [EC:3.6.3.25]
Sulfate/thiosulfate import ATP-binding protein CysA {ECO:0000256|HAMAP-Rule:MF_01701}; EC=3.6.3.25 {ECO:0000256|HAMAP-Rule:MF_01701};; Sulfate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01701}; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
Sulfate ABC transporter, ATPase subunit n=1 Tax=Sinorhizobium meliloti (strain BL225C) RepID=F6C4R1_SINMB
SCNpilot_expt_1000_bf_scaffold_714_curated_2
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(680..1771)
DNA (1092bp) protein (364aa)
Putative monooxygenase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U6F8_9RHIZ
Alkanesulfonate monooxygenase {ECO:0000313|EMBL:KGD87363.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
alkanesulfonate monooxygenase
SCNpilot_expt_1000_bf_scaffold_714_curated_3
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1863..2414)
DNA (552bp) protein (184aa)
membrane protein n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI00037207B9
Uncharacterized protein {ECO:0000313|EMBL:AJD41560.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_714_curated_4
unknown

Not on your lists

comp(2515..3120)
DNA (606bp) protein (202aa)
Tyrosine-protein kinase CSK id=12551763 bin=BDI species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BDI organism_group=Betaproteobacteria
SCNpilot_expt_1000_bf_scaffold_714_curated_5
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3619..6195
DNA (2577bp) protein (859aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CCGE 510 RepID=J4TB19_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJT04797.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_714_curated_6
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6198..8120
DNA (1923bp) protein (641aa)
cyaA1; adenylate cyclase 1 (EC:4.6.1.1)
Adenylate cyclase 1 {ECO:0000313|EMBL:AFL50176.1}; EC=4.6.1.1 {ECO:0000313|EMBL:AFL50176.1};; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000371A425
SCNpilot_expt_1000_bf_scaffold_714_curated_7
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8203..9243)
DNA (1041bp) protein (347aa)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
Glutamine synthetase n=2 Tax=Rhizobium mesoamericanum RepID=K0Q629_9RHIZ
glutamine synthetase 2
SCNpilot_expt_1000_bf_scaffold_714_curated_8
unknown

Not on your lists

9622..9819
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_714_curated_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9920..10108)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XSA5_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:CDN95148.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_714_curated_10
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10489..11883)
DNA (1395bp) protein (465aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI0003727931
Uncharacterized protein {ECO:0000313|EMBL:KDP71544.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_714_curated_11
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12004..12921
DNA (918bp) protein (306aa)
Transcriptional regulator protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JJ90_AGRRK
Putative LysR family transcriptional regulator {ECO:0000313|EMBL:GAJ92977.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
transcriptional regulator protein
SCNpilot_expt_1000_bf_scaffold_714_curated_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12968..13999
DNA (1032bp) protein (344aa)
Transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=J0H2M5_RHILT
Transcriptional regulator {ECO:0000313|EMBL:EJB04255.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_714_curated_13
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13996..15030)
DNA (1035bp) protein (345aa)
Myo-inositol catabolism n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JHY1_AGRRK
Putative sugar kinase {ECO:0000313|EMBL:GAJ93655.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
iolC; myo-inositol catabolism
SCNpilot_expt_1000_bf_scaffold_714_curated_14
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15030..15701)
DNA (672bp) protein (224aa)
ABC-type sugar transport system, auxiliary component n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0BHK5_RHILV
ABC-type sugar transport system, auxiliary component {ECO:0000313|EMBL:EJC69407.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
hypothetical protein; K09988 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_714_curated_15
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15701..16855)
DNA (1155bp) protein (385aa)
oxidoreductase n=1 Tax=Rhizobium leguminosarum RepID=UPI00036D9390
Oxidoreductase {ECO:0000313|EMBL:AHF82391.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
oxidoreductase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_714_curated_16
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16881..17633)
DNA (753bp) protein (251aa)
aldolase; K01623 fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
Aldolase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QRA4_9RHIZ
Aldolase {ECO:0000313|EMBL:EKF57537.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
SCNpilot_expt_1000_bf_scaffold_714_curated_17
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17863..18444
DNA (582bp) protein (194aa)
UPI0003D05DA9 related cluster n=1 Tax=unknown RepID=UPI0003D05DA9
HutD-family protein {ECO:0000313|EMBL:KDP70346.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein; K09975 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_714_curated_18
unknown

Not on your lists

comp(18445..18663)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_714_curated_19
unknown

Not on your lists

comp(18810..18995)
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_714_curated_20
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19203..19901
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5RY31_RHIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGS20036.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_714_curated_21
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19898..21037
DNA (1140bp) protein (380aa)
Phosphonate metabolism protein PhnM n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LHV0_RHITR
phnM1; phosphonate metabolism protein PhnM
Phosphonate metabolism protein PhnM {ECO:0000313|EMBL:AGB69620.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_714_curated_22
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21037..21636
DNA (600bp) protein (200aa)
Ribose 1,5-bisphosphate phosphokinase PhnN {ECO:0000256|HAMAP-Rule:MF_00836}; EC=2.7.4.23 {ECO:0000256|HAMAP-Rule:MF_00836};; Ribose 1,5-bisphosphokinase {ECO:0000256|HAMAP-Rule:MF_00836}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
phnN; ribose 1,5-bisphosphate phosphokinase PhnN (EC:2.7.4.23)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037CB37A
SCNpilot_expt_1000_bf_scaffold_714_curated_23
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21689..23290
DNA (1602bp) protein (534aa)
Heme-binding protein A n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CH28_9RHIZ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGE00881.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
oligopeptide ABC transporter substrate binding protein
SCNpilot_expt_1000_bf_scaffold_714_curated_24
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23335..24324
DNA (990bp) protein (330aa)
Putative ABC transporter permease n=1 Tax=Rhizobium sp. Pop5 RepID=K0VRD7_9RHIZ
Putative ABC transporter permease {ECO:0000313|EMBL:EJZ20190.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
binding-protein-dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_714_curated_25
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24321..25154
DNA (834bp) protein (278aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0BZB3_RHILT
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:EJC71925.1}; Flags: Precursor;; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
binding-protein-dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_714_curated_26
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25151..25933
DNA (783bp) protein (261aa)
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component n=1 Tax=Rhizobium sp. CF142 RepID=J1SX71_9RHIZ
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component {ECO:0000313|EMBL:EJJ29858.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
oligopeptide ABC transporter ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_714_curated_27
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25930..26724
DNA (795bp) protein (265aa)
Nickel-transporting ATPase {ECO:0000313|EMBL:EUB96421.1}; EC=3.6.3.24 {ECO:0000313|EMBL:EUB96421.1};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
ATPase component of various ABC-type transport systems with duplicated ATPase domain n=1 Tax=Rhizobium sp. CF080 RepID=J3BRZ5_9RHIZ
oligopeptide ABC transporter ATPase; K02032 peptide/nickel transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_714_curated_28
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26730..28004)
DNA (1275bp) protein (425aa)
MFS transporter n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DACC4B
Transmembrane transport protein {ECO:0000313|EMBL:CCV10805.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_714_curated_29
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28132..28752
DNA (621bp) protein (207aa)
UPI0003CF4A5F related cluster n=1 Tax=unknown RepID=UPI0003CF4A5F
TetR family transcriptional regulator {ECO:0000313|EMBL:CDX45127.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_714_curated_30
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28782..30524)
DNA (1743bp) protein (581aa)
gamma-glutamyltransferase; K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
gamma-glutamyltransferase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FDC7EA
Gamma-glutamyltransferase {ECO:0000313|EMBL:ERI11905.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
Displaying items 1-30 of 73 in total

View Taxonomy