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SCNpilot_expt_1000_bf_scaffold_1748_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1748_curated_1
unknown

Not on your lists

comp(3..86)
DNA (84bp) protein (28aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1748_curated_2
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1466..1915)
DNA (450bp) protein (150aa)
response regulator n=1 Tax=Rhizobium mongolense RepID=UPI0003B44109
Response regulator CheY-like domain-containing protein {ECO:0000313|EMBL:AJD45222.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
response regulator
SCNpilot_expt_1000_bf_scaffold_1748_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2268..2888)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D321_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81502.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
periplasmic ligand-binding sensor protein; K09945 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1748_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2931..3647)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRM2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78719.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K06890
SCNpilot_expt_1000_bf_scaffold_1748_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3688..4461)
DNA (774bp) protein (258aa)
Putative transmembrane anti-sigma factor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBQ4_9RHIZ
Putative transmembrane anti-sigma factor {ECO:0000313|EMBL:EYR78720.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1748_curated_6
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4448..4987)
DNA (540bp) protein (180aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Rhizobium sp. CF122 RepID=J2I501_9RHIZ
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EJL50945.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_1748_curated_7
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5212..6144
DNA (933bp) protein (311aa)
membrane protein n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00035D5DD9
Uncharacterized protein {ECO:0000313|EMBL:GAK72434.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
conserved membrane protein of unknown function
SCNpilot_expt_1000_bf_scaffold_1748_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6244..6636)
DNA (393bp) protein (131aa)
Putative K(+)/H(+) antiporter subunit G n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX70_9RHIZ
Putative K(+)/H(+) antiporter subunit G {ECO:0000313|EMBL:EYR77488.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative monovalent cation/H+ antiporter subunit G; K05564 multicomponent K+:H+ antiporter subunit G
SCNpilot_expt_1000_bf_scaffold_1748_curated_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6633..6914)
DNA (282bp) protein (94aa)
Multiple resistance and pH regulation protein F n=2 Tax=Rhodopseudomonas palustris RepID=B3QKI9_RHOPT
phaF; monovalent cation/H+ antiporter subunit F; K05563 multicomponent K+:H+ antiporter subunit F
Multiple resistance and pH regulation protein F {ECO:0000313|EMBL:ACF01638.1}; Flags: Precursor;; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_expt_1000_bf_scaffold_1748_curated_10
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6911..7399)
DNA (489bp) protein (163aa)
Putative monovalent cation/H+ antiporter subunit E n=2 Tax=Agrobacterium RepID=F0L5Y9_AGRSH
phaE; monovalent cation/H+ antiporter subunit E; K05562 multicomponent K+:H+ antiporter subunit E
Putative monovalent cation/H+ antiporter subunit E {ECO:0000313|EMBL:ADY63442.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_expt_1000_bf_scaffold_1748_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7396..9021)
DNA (1626bp) protein (542aa)
Putative K(+)/H(+) antiporter subunit D n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCV4_9RHIZ
Putative K(+)/H(+) antiporter subunit D {ECO:0000313|EMBL:EYR77491.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phaD; multisubunit K+/H+ antiporter subunit D
SCNpilot_expt_1000_bf_scaffold_1748_curated_12
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9018..9362)
DNA (345bp) protein (115aa)
pH adaption potassium efflux system protein n=3 Tax=Agrobacterium RepID=A9CK78_AGRT5
phaC; monovalent cation/H+ antiporter subunit C; K05560 multicomponent K+:H+ antiporter subunit C
Monovalent cation/H+ antiporter subunit C {ECO:0000313|EMBL:KJF75123.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
SCNpilot_expt_1000_bf_scaffold_1748_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9362..12292)
DNA (2931bp) protein (977aa)
Putative K(+)/H(+) antiporter subunit A/B n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX74_9RHIZ
Putative K(+)/H(+) antiporter subunit A/B {ECO:0000313|EMBL:EYR77493.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phaA; monovalent cation/H+ antiporter subunit A; K05559 multicomponent K+:H+ antiporter subunit A
SCNpilot_expt_1000_bf_scaffold_1748_curated_14
unknown

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comp(12405..12794)
DNA (390bp) protein (130aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1748_curated_15
Cronobacter sakazakii, Cronobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13234..15273
DNA (2040bp) protein (680aa)
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=290339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Cronobacter.;" source="Cronobacter sakazakii (strain ATCC BAA-894) (Enterobacter sakazakii).;"
hypothetical protein; K02438 glycogen operon protein GlgX [EC:3.2.1.-]
Uncharacterized protein n=1 Tax=Cronobacter sakazakii (strain ATCC BAA-894) RepID=A7MRL1_CROS8
SCNpilot_expt_1000_bf_scaffold_1748_curated_16
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15342..16817)
DNA (1476bp) protein (492aa)
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
glgA; glycogen synthase; K00703 starch synthase [EC:2.4.1.21]
Glycogen synthase n=1 Tax=Rhizobium sp. CF080 RepID=J2L2U2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1748_curated_17
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17015..17254)
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000369B320
Uncharacterized protein {ECO:0000313|EMBL:EJL53646.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1748_curated_18
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17432..17686
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F8Q6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EHS50800.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
SCNpilot_expt_1000_bf_scaffold_1748_curated_19
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17696..18253)
DNA (558bp) protein (186aa)
DNA-3-methyladenine glycosylase; K03652 DNA-3-methyladenine glycosylase [EC:3.2.2.21]
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097343}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097340};; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
Putative 3-methyladenine DNA glycosylase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4REY1_PHEZH
SCNpilot_expt_1000_bf_scaffold_1748_curated_20
unknown

Not on your lists

comp(18261..18434)
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1748_curated_21
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18580..18969)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036BA694
Uncharacterized protein {ECO:0000313|EMBL:AJD42593.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1748_curated_22
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19128..19631
DNA (504bp) protein (168aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KRS5_MESAW
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
RNA polymerase sigma factor, sigma-70 family
SCNpilot_expt_1000_bf_scaffold_1748_curated_23
unknown

Not on your lists

comp(19654..20289)
DNA (636bp) protein (212aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1748_curated_24
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21747..22262
DNA (516bp) protein (172aa)
Malto-oligosyltrehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; Short=MTHase {ECO:0000256|PIRNR:PIRNR006337};; EC=3.2.1.141 {ECO:0000256|PIRNR:PIRNR006337};; 4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; Maltooligosyl trehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 1
Malto-oligosyltrehalose trehalohydrolase n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CIQ1_9RHOB
Malto-oligosyltrehalose trehalohydrolase
Displaying 24 items

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