ggKbase home page

SCNpilot_expt_1000_bf_scaffold_11136_curated

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_11136_curated_1
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..613)
DNA (612bp) protein (204aa)
FAD-oxidoreductase protein; K00108 choline dehydrogenase [EC:1.1.99.1]
Choline dehydrogenase-like flavoprotein n=1 Tax=Rhizobium sp. CF122 RepID=J2JA09_9RHIZ
Choline dehydrogenase-like flavoprotein {ECO:0000313|EMBL:EJL57903.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
SCNpilot_expt_1000_bf_scaffold_11136_curated_2
unknown

Not on your lists

comp(961..1239)
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_11136_curated_3
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1345..2025)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J1TCI1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ29511.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_11136_curated_4
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2046..2447)
DNA (402bp) protein (134aa)
Probable transcriptional regulator protein, GntR family n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3Q3G1_RHIE6
putative GntR family transcriptional regulator
Probable transcriptional regulator protein, GntR family {ECO:0000313|EMBL:ACE94718.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
SCNpilot_expt_1000_bf_scaffold_11136_curated_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2927..3958
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00036505F2
Uncharacterized protein {ECO:0000313|EMBL:KDP72816.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
proline racemase
SCNpilot_expt_1000_bf_scaffold_11136_curated_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3969..4163
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00037280D9
4-oxalocrotonate tautomerase {ECO:0000313|EMBL:CDN95226.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
putative tautomerase
SCNpilot_expt_1000_bf_scaffold_11136_curated_7
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4183..5208
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036EC269
Lactate dehydrogenase {ECO:0000313|EMBL:AIB16491.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
putative enzyme
SCNpilot_expt_1000_bf_scaffold_11136_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5214..5423)
DNA (210bp) protein (70aa)
hypothetical protein; K01821 4-oxalocrotonate tautomerase [EC:5.3.2.-]
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYI4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR77836.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_11136_curated_9
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5558..5812
DNA (255bp) protein (85aa)
glutathione S-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18]
glutathione S-transferase n=1 Tax=Sinorhizobium medicae RepID=UPI00038103B0
Glutathione S-transferase domain {ECO:0000313|EMBL:ABR63675.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
Displaying 9 items

View Taxonomy