ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1833_curated

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1833_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40..1473)
DNA (1434bp) protein (478aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
Amidase family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRG4_9RHIZ
Amidase family protein {ECO:0000313|EMBL:EYR81069.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_1833_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1612..2568
DNA (957bp) protein (319aa)
Transcriptional regulator, LysR family n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FCY1_9RHIZ
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EYR81070.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
lysR; transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1833_curated_3
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2718..3614)
DNA (897bp) protein (299aa)
Dihydrodipicolinate synthase {ECO:0000313|EMBL:EPX85278.1}; EC=4.3.3.7 {ECO:0000313|EMBL:EPX85278.1};; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
dihydrodipicolinate synthase n=1 Tax=Variovorax paradoxus RepID=UPI00037CAE12
dihydrodipicolinate synthase
SCNpilot_expt_1000_bf_scaffold_1833_curated_4
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3728..5401)
DNA (1674bp) protein (558aa)
dak1; dihydroxyacetone kinase; K00863 dihydroxyacetone kinase [EC:2.7.1.29]
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002F030F2
Dihydroxyacetone kinase {ECO:0000313|EMBL:KJF72871.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
SCNpilot_expt_1000_bf_scaffold_1833_curated_5
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5416..6603)
DNA (1188bp) protein (396aa)
Putative aspartate transaminase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TQH6_TISMK
aspC; putative aspartate transaminase
Putative aspartate transaminase {ECO:0000313|EMBL:AFK55014.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_1000_bf_scaffold_1833_curated_6
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

6829..7707
DNA (879bp) protein (293aa)
Extracellular solute-binding protein family 3 n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1RC49_SPISS
family 3 extracellular solute-binding protein
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:ADK79929.1}; Flags: Precursor;; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228).;"
SCNpilot_expt_1000_bf_scaffold_1833_curated_7
Geobacillus kaustophilus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7793..8533
DNA (741bp) protein (247aa)
protein GlnQ; K10041 putative glutamine transport system ATP-binding protein [EC:3.6.3.-]
ABC transporter n=1 Tax=Deinococcus wulumuqiensis RepID=UPI0003608052
ABC transporter family protein {ECO:0000313|EMBL:KJE27519.1}; TaxID=1462 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus kaustophilus.;"
SCNpilot_expt_1000_bf_scaffold_1833_curated_8
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

8538..9209
DNA (672bp) protein (224aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1RC51_SPISS
polar amino acid ABC transporter inner membrane protein
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ADK79931.1}; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228).;"
SCNpilot_expt_1000_bf_scaffold_1833_curated_9
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

9212..9877
DNA (666bp) protein (222aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1RC52_SPISS
polar amino acid ABC transporter inner membrane protein
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ADK79932.1}; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228).;"
SCNpilot_expt_1000_bf_scaffold_1833_curated_10
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10432..10704
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AUH4_AZOBR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCD01583.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCNpilot_expt_1000_bf_scaffold_1833_curated_11
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10886..11899)
DNA (1014bp) protein (338aa)
Biotin synthase {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00009987}; EC=2.8.1.6 {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00250466};; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
bioB; biotin synthase; K01012 biotin synthetase [EC:2.8.1.6]
Biotin synthase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N0R4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1833_curated_12
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11961..12452)
DNA (492bp) protein (164aa)
BioY protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LJC0_9RHIZ
BioY protein {ECO:0000313|EMBL:EKF17839.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
BioY protein; K03523 putative biotin biosynthesis protein BioY
SCNpilot_expt_1000_bf_scaffold_1833_curated_13
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12530..13195)
DNA (666bp) protein (222aa)
GntR family transcriptional regulator n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MA04_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:EKF17840.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1833_curated_14
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13283..14083)
DNA (801bp) protein (267aa)
Endonuclease/exonuclease/phosphatase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q668_9RHIZ
hypothetical protein; K06896
Endonuclease/exonuclease/phosphatase {ECO:0000313|EMBL:CCM79334.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
SCNpilot_expt_1000_bf_scaffold_1833_curated_15
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14125..15603)
DNA (1479bp) protein (493aa)
Cardiolipin synthetase n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5S3Z2_RHIET
cls; cardiolipin synthetase
Cardiolipin synthetase {ECO:0000313|EMBL:AIC30301.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
SCNpilot_expt_1000_bf_scaffold_1833_curated_16
Mesorhizobium sp. L2C054A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15693..17654)
DNA (1962bp) protein (654aa)
UPI0003CFCA4B related cluster n=1 Tax=unknown RepID=UPI0003CFCA4B
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:ESZ51240.1}; TaxID=1287100 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C054A000.;"
peroxisomal bifunctional enzyme
SCNpilot_expt_1000_bf_scaffold_1833_curated_17
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17740..18135)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NLQ6_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF21711.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
endoribonuclease L-PSP
SCNpilot_expt_1000_bf_scaffold_1833_curated_18
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18180..18383)
DNA (204bp) protein (68aa)
Putative acyl-CoA dehydrogenase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V016_9RHIZ
Putative acyl-CoA dehydrogenase {ECO:0000313|EMBL:ENN87240.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
acyl-CoA dehydrogenase
SCNpilot_expt_1000_bf_scaffold_1833_curated_19
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18361..19380)
DNA (1020bp) protein (340aa)
Putative acyl-CoA dehydrogenase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V016_9RHIZ
Putative acyl-CoA dehydrogenase {ECO:0000313|EMBL:ENN87240.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
acyl-CoA dehydrogenase
SCNpilot_expt_1000_bf_scaffold_1833_curated_20
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19385..20227)
DNA (843bp) protein (281aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:EPE94058.1}; EC=4.2.1.17 {ECO:0000313|EMBL:EPE94058.1};; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
Enoyl-CoA hydratase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3I2S9_9RHIZ
enoyl-CoA hydratase/isomerase
SCNpilot_expt_1000_bf_scaffold_1833_curated_21
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20417..20863)
DNA (447bp) protein (149aa)
Cupin domain-containing protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HSA8_9RHIZ
Cupin family protein {ECO:0000313|EMBL:CDN50048.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1833_curated_22
unknown

Not on your lists

20882..21208
DNA (327bp) protein (109aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1833_curated_23
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21685..24006)
DNA (2322bp) protein (774aa)
salicylyl-CoA 5-hydroxylase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000372FFD1
Salicylyl-CoA 5-hydroxylase {ECO:0000313|EMBL:KGD87332.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
2-amninobenzoyl-CoA monooxygenase/reductase
SCNpilot_expt_1000_bf_scaffold_1833_curated_24
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24327..26480
DNA (2154bp) protein (718aa)
Indolepyruvate ferredoxin oxidoreductase alpha subunit n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UAK0_9RHIZ
Indolepyruvate ferredoxin oxidoreductase alpha subunit {ECO:0000313|EMBL:ENN87228.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
indolepyruvate ferredoxin oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1833_curated_25
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26494..28041
DNA (1548bp) protein (516aa)
Pyruvate ferredoxin/flavodoxin oxidoreductase Metabolism n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V891_9RHIZ
Pyruvate ferredoxin/flavodoxin oxidoreductase Metabolism {ECO:0000313|EMBL:ENN87227.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
pyruvate ferredoxin/flavodoxin oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1833_curated_26
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28161..28667)
DNA (507bp) protein (169aa)
Transcriptional regulator n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3H6Z6_9RHIZ
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ENN87226.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
transcriptional regulator, MarR family
SCNpilot_expt_1000_bf_scaffold_1833_curated_27
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28819..29607)
DNA (789bp) protein (263aa)
Cyclase family protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LLF5_RHITR
Cyclase {ECO:0000313|EMBL:KGD87344.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
cyclase family protein
SCNpilot_expt_1000_bf_scaffold_1833_curated_28
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30024..31148
DNA (1125bp) protein (375aa)
DNA replication and repair protein RecF n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UUJ7_9RHIZ
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
recF; recombination protein F; K03629 DNA replication and repair protein RecF
SCNpilot_expt_1000_bf_scaffold_1833_curated_29
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31191..31952
DNA (762bp) protein (254aa)
Molybdopterin biosynthesis protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JGW0_AGRRK
moeB; molybdopterin biosynthesis protein MoeB
Molybdopterin biosynthesis protein {ECO:0000313|EMBL:ACM24956.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1833_curated_30
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31960..32961)
DNA (1002bp) protein (334aa)
Putative D-isomer specific 2-hydroxyacid dehydrogenases family protein putative Glyoxylate reductase (Glycolate reductase) {ECO:0000313|EMBL:CCF21768.1}; EC=1.1.1.26 {ECO:0000313|EMBL:CCF21768.1};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
D-2-hydroxyacid dehydrogenase (EC:1.1.1.26); K00015 glyoxylate reductase [EC:1.1.1.26]
Putative D-isomer specific 2-hydroxyacid dehydrogenases family protein putative Glyoxylate reductase (Glycolate reductase) n=1 Tax=Rhizobium sp. RepID=L0NL09_RHISP
Displaying items 1-30 of 51 in total

View Taxonomy