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SCNpilot_expt_1000_bf_scaffold_1059_curated

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1059_curated_1
unknown

Not on your lists

3..83
DNA (81bp) protein (27aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1059_curated_2
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

342..1319
DNA (978bp) protein (326aa)
flagellin n=1 Tax=Rhizobium giardinii RepID=UPI000360C179
flaC3; flagellin C
Flagellin C {ECO:0000313|EMBL:AFL48918.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_expt_1000_bf_scaffold_1059_curated_3
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1665..2297
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2L2F9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUC00285.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1059_curated_4
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3564..4325
DNA (762bp) protein (254aa)
Uncharacterized protein (Fragment) n=1 Tax=Rhizobium sp. CF080 RepID=J3AR44_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUC00283.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
motC; Chemotaxis protein MotC
SCNpilot_expt_1000_bf_scaffold_1059_curated_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4315..4824
DNA (510bp) protein (170aa)
chemotaxis protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036E5A68
Chemotaxis protein motility protein C {ECO:0000313|EMBL:AHK43426.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
chemotaxis protein; K10564 chemotaxis protein MotC
SCNpilot_expt_1000_bf_scaffold_1059_curated_6
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4826..6379
DNA (1554bp) protein (518aa)
Flagellar hook-length control protein FliK n=1 Tax=Rhizobium sp. CF142 RepID=J2AQV1_9RHIZ
Flagellar hook-length control protein FliK {ECO:0000313|EMBL:EJJ25650.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
motD; chemotaxis motility protein; K10565 chemotaxis protein MotD
SCNpilot_expt_1000_bf_scaffold_1059_curated_7
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6330..6887
DNA (558bp) protein (186aa)
lytic transglycosylase n=1 Tax=Rhizobium phaseoli RepID=UPI0003736BF6
Chemotaxis motility protein {ECO:0000313|EMBL:EGE59968.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
Lytic transglycosylase
SCNpilot_expt_1000_bf_scaffold_1059_curated_8
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7168..7839
DNA (672bp) protein (224aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F0M5_9RHIZ
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:EHS53762.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
two-component response regulator protein
SCNpilot_expt_1000_bf_scaffold_1059_curated_9
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7963..9264
DNA (1302bp) protein (434aa)
Flagellar hook protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PTD4_9RHIZ
Flagellar hook protein {ECO:0000313|EMBL:CCM74437.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
flgE; flagellar hook protein FlgE; K02390 flagellar hook protein FlgE
SCNpilot_expt_1000_bf_scaffold_1059_curated_10
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9288..10721
DNA (1434bp) protein (478aa)
flagellar hook-associated protein FlgK n=1 Tax=Rhizobium mongolense RepID=UPI0003B78595
Flagellar hook-associated protein {ECO:0000313|EMBL:EGE59972.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
flgK; flagellar hook-associated protein FlgK; K02396 flagellar hook-associated protein 1 FlgK
SCNpilot_expt_1000_bf_scaffold_1059_curated_11
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10725..11768
DNA (1044bp) protein (348aa)
flagellar hook-associated protein FlgL n=1 Tax=Rhizobium meliloti RepID=UPI0003198CFD
Flagellar hook protein FlgL {ECO:0000313|EMBL:KEQ10765.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
flagellin domain-containing protein; K02397 flagellar hook-associated protein 3 FlgL
SCNpilot_expt_1000_bf_scaffold_1059_curated_12
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11806..12153
DNA (348bp) protein (116aa)
Flagellar biosynthesis regulator FlaF n=1 Tax=Rhizobium sp. CF142 RepID=J2KY07_9RHIZ
Flagellar biosynthesis regulator FlaF {ECO:0000313|EMBL:EJJ25644.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
flaF; flagellar biosynthesis regulatory protein FlaF; K06602 flagellar protein FlaF
SCNpilot_expt_1000_bf_scaffold_1059_curated_13
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12150..12599
DNA (450bp) protein (150aa)
Probable flagellum biosynthesis repressor protein FlbT n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q5F3_9RHIZ
Probable flagellum biosynthesis repressor protein FlbT {ECO:0000256|HAMAP-Rule:MF_00783}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
flbT; flagellum biosynthesis repressor protein FlbT
SCNpilot_expt_1000_bf_scaffold_1059_curated_14
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12590..13150
DNA (561bp) protein (187aa)
Flagellar hook capping protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LFY4_RHITR
flgD; flagellar hook capping protein
Flagellar hook capping protein {ECO:0000313|EMBL:AGB70097.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1059_curated_15
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13284..13550
DNA (267bp) protein (89aa)
Flagellar biosynthetic protein FliQ n=1 Tax=Rhizobium sp. CF080 RepID=J3CG49_9RHIZ
Flagellar biosynthetic protein FliQ {ECO:0000313|EMBL:CDN46399.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
fliQ; flagellar biosynthesis protein FliQ; K02420 flagellar biosynthetic protein FliQ
SCNpilot_expt_1000_bf_scaffold_1059_curated_16
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13737..15824
DNA (2088bp) protein (696aa)
Flagellar biosynthesis protein FlhA n=1 Tax=Rhizobium sp. Pop5 RepID=K0W6Q4_9RHIZ
Flagellar biosynthesis transmembrane protein {ECO:0000313|EMBL:EGE59980.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
flhA; flagellar biosynthesis protein FlhA; K02400 flagellar biosynthesis protein FlhA
SCNpilot_expt_1000_bf_scaffold_1059_curated_17
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15821..16573
DNA (753bp) protein (251aa)
Flagellar biosynthetic protein FliR n=1 Tax=Rhizobium sp. RepID=L0NAE0_RHISP
Flagellar biosynthetic protein fliR {ECO:0000256|RuleBase:RU003842}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
fliR; flagellar biosynthesis protein FliR; K02421 flagellar biosynthetic protein FliR
SCNpilot_expt_1000_bf_scaffold_1059_curated_18
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16598..17017
DNA (420bp) protein (140aa)
Putative FliR/FliJ-like chaperone n=1 Tax=Rhizobium sp. RepID=L0NB14_RHISP
Uncharacterized protein {ECO:0000313|EMBL:KEQ09408.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1059_curated_19
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17049..17603
DNA (555bp) protein (185aa)
Rod binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003721AE9
Rod binding protein {ECO:0000313|EMBL:EJC69501.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1059_curated_20
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17600..17983
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2T3Y6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:GAJ94967.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1059_curated_21
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17983..18525
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3CJH4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUC00267.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
conserved exported protein of unknown function
SCNpilot_expt_1000_bf_scaffold_1059_curated_22
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18701..20452
DNA (1752bp) protein (584aa)
succinoglycan biosynthesis protein ExoP n=1 Tax=Rhizobium leguminosarum RepID=UPI00035E79A2
Succinoglycan biosynthesis transport protein {ECO:0000313|EMBL:EJZ22608.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
succinoglycan biosynthesis transport protein
SCNpilot_expt_1000_bf_scaffold_1059_curated_23
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20637..21536
DNA (900bp) protein (300aa)
folD-1; bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/cyclohydrolase FolD 1 (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HLL8_9RHIZ
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_expt_1000_bf_scaffold_1059_curated_24
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21611..22069
DNA (459bp) protein (153aa)
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2A2Z1_RHIET
Uncharacterized protein {ECO:0000313|EMBL:CDX58504.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
lactoylglutathione lyase family protein
SCNpilot_expt_1000_bf_scaffold_1059_curated_25
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22162..23184)
DNA (1023bp) protein (341aa)
Transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0CGJ4_RHILT
Transcriptional regulator {ECO:0000313|EMBL:EJC82602.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1059_curated_26
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23538..24899
DNA (1362bp) protein (454aa)
Alpha-glucoside ABC transporter, substrate-binding protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HMG4_9RHIZ
aglE; alpha-glucoside ABC transporter substrate-binding protein; K10232 alpha-glucoside transport system substrate-binding protein
Alpha-glucoside ABC transporter, substrate-binding protein {ECO:0000313|EMBL:EPE99749.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_expt_1000_bf_scaffold_1059_curated_27
unknown

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comp(25477..25641)
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1059_curated_28
unknown

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comp(25660..26016)
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1059_curated_29
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26229..27329
DNA (1101bp) protein (367aa)
Alpha-glucoside transport system permease protein AglG n=1 Tax=Rhizobium sp. IRBG74 RepID=U4PQU6_9RHIZ
aglG; Alpha-glucoside transport system permease protein AglG
Alpha-glucoside ABC transporter permease {ECO:0000313|EMBL:KGE82948.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
SCNpilot_expt_1000_bf_scaffold_1059_curated_30
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27365..29023
DNA (1659bp) protein (553aa)
aglA; alpha-glucosidase (EC:3.2.1.20); K01187 alpha-glucosidase [EC:3.2.1.20]
Alpha-glucosidase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HLM3_9RHIZ
Alpha-glucosidase {ECO:0000313|EMBL:EPE99752.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
Displaying items 1-30 of 46 in total

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