ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4566_curated

Search features with annotation key words

Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4566_curated_1
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..630)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MFR3_RHISN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACP26120.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_4566_curated_2
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(757..1140)
DNA (384bp) protein (128aa)
Cytochrome-c protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J7U2_AGRRK
cytochrome-c protein; K08738 cytochrome c
Cytochrome C {ECO:0000313|EMBL:KEA06142.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_4566_curated_3
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1342..2298
DNA (957bp) protein (319aa)
glycine/betaine ABC transporter substrate-binding protein n=1 Tax=Rhizobium giardinii RepID=UPI000381A275
Proline/glycine betaine ABC transporter, substrate-binding protein {ECO:0000313|EMBL:AHK45098.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
choline ABC transporter periplasmic binding protein; K02002 glycine betaine/proline transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_4566_curated_4
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2378..3223
DNA (846bp) protein (282aa)
glycine/betaine ABC transporter permease n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003782902
proW; proline/glycine betaine ABC transporter permease; K02001 glycine betaine/proline transport system permease protein
Glycine betaine transport system permease protein opuAB {ECO:0000313|EMBL:CCM76553.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
SCNpilot_expt_1000_bf_scaffold_4566_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3220..4269
DNA (1050bp) protein (350aa)
opuA; glycine betaine/L-proline ABC transporter,ATP-binding protein, putative; K02000 glycine betaine/proline transport system ATP-binding protein [EC:3.6.3.32]
Glycine betaine/L-proline transport ATP-binding protein ProV n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERD1_9RHIZ
Glycine betaine/L-proline transport ATP-binding protein ProV {ECO:0000313|EMBL:EYR83489.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_4566_curated_6
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4434..5189
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NH15_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF20121.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
pyridoxamine 5'-phosphate oxidase-like FMN-binding protein; K07226 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4566_curated_7
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5396..5710
DNA (315bp) protein (105aa)
Putative transcriptional regulator n=1 Tax=Rhizobium sp. CF080 RepID=J2JNG3_9RHIZ
Nodulation protein NolR {ECO:0000313|EMBL:CDN48757.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
nolR; transcriptional regulator ArsR family
SCNpilot_expt_1000_bf_scaffold_4566_curated_8
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5858..6565)
DNA (708bp) protein (236aa)
Endoglucanase {ECO:0000256|RuleBase:RU361166}; EC=3.2.1.4 {ECO:0000256|RuleBase:RU361166};; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003674BBB
cel1; endoglucanase
Displaying 8 items

View Taxonomy